LOC102555751 (uncharacterized LOC102555751) - Rat Genome Database

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Gene: LOC102555751 (uncharacterized LOC102555751) Rattus norvegicus
Analyze
Symbol: LOC102555751
Name: uncharacterized LOC102555751
RGD ID: 7511826
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82042,442,167 - 42,495,575 (+)NCBIGRCr8
mRatBN7.22040,887,374 - 40,907,114 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02042,750,541 - 42,770,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02044,478,103 - 44,497,134 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2041,634,492 - 41,654,368 (+)NCBICelera
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102555751
617 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203215696745978663Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001834885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_599457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ231688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005497838
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82042,442,185 - 42,460,853 (+)NCBI
mRatBN7.22040,887,381 - 40,905,992 (+)NCBI
RefSeq Acc Id: XR_005497839
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82042,451,948 - 42,460,853 (+)NCBI
mRatBN7.22040,897,139 - 40,905,992 (+)NCBI
RefSeq Acc Id: XR_005497840
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82042,442,190 - 42,495,575 (+)NCBI
mRatBN7.22040,887,383 - 40,907,114 (+)NCBI
RefSeq Acc Id: XR_005497841
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82042,451,942 - 42,460,853 (+)NCBI
mRatBN7.22040,897,139 - 40,905,992 (+)NCBI
RefSeq Acc Id: XR_005497842
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82042,442,167 - 42,460,853 (+)NCBI
mRatBN7.22040,887,374 - 40,905,992 (+)NCBI
RefSeq Acc Id: XR_597434
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82042,451,947 - 42,460,853 (+)NCBI
mRatBN7.22040,897,139 - 40,905,992 (+)NCBI
Rnor_6.02042,751,576 - 42,759,448 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3507 BioCyc
NCBI Gene LOC102555751 ENTREZGENE
PhenoGen LOC102555751 PhenoGen
RNAcentral URS0000CCF159 RNACentral
  URS0000CCFA1C RNACentral
  URS0000CCFB18 RNACentral
  URS0000CD0072 RNACentral
  URS0000CD0351 RNACentral
  URS0000CD0742 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102555751  uncharacterized LOC102555751      Symbol and Name status set to provisional 70820 PROVISIONAL