n-TLcag5 (nuclear encoded tRNA leucine 5 (anticodon CAG)) - Rat Genome Database
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Summary
Annotation
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Genomics
Variants
QTLs in Region (GRCm39)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
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Nomenclature History
Gene: n-TLcag5 (nuclear encoded tRNA leucine 5 (anticodon CAG)) Mus musculus
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Analyze
General
Array IDs
Symbol:
n-TLcag5
Name:
nuclear encoded tRNA leucine 5 (anticodon CAG)
RGD ID:
7488558
MGI Page
MGI
Description:
Type:
trna
RefSeq Status:
MODEL
Previously known as:
n-Tl17; nuclear encoded tRNA leucine 17 (anticodon CAG)
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCm39
8
95,430,259 - 95,430,341 (+)
NCBI
GRCm39
GRCm39
mm39
GRCm38
8
94,703,631 - 94,703,713 (+)
NCBI
GRCm38
GRCm38
mm10
GRCm38
MGSCv37
MT
94,703,631 - 94,703,713 (+)
NCBI
GRCm37
MGSCv37
mm9
NCBIm37
Celera
8
99,032,094 - 99,032,176 (+)
NCBI
Celera
Cytogenetic Map
8
C5
NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
Gene Ontology Annotations
Click to see Annotation Summary View
Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
n-TLcag5
Mouse
biological_process
involved_in
ND
2290270
MGI
GO_REF:0000015
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Cellular Component
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Only show annotations with direct experimental evidence (0 objects hidden)
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
n-TLcag5
Mouse
cellular_component
is_active_in
ND
2290270
MGI
GO_REF:0000015
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Molecular Function
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Only show annotations with direct experimental evidence (0 objects hidden)
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
n-TLcag5
Mouse
molecular_function
enables
ND
2290270
MGI
GO_REF:0000015
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Gene Ontology Annotations
Click to see Annotation Summary View
Biological Process
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biological_process
(ND)
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Cellular Component
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cellular_component
(ND)
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Molecular Function
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molecular_function
(ND)
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References
Additional References at PubMed
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PMID:
18984615
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Genomics
.
Variants
.
Variants in n-TLcag5
3 total Variants
QTLs in Region (GRCm39)
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The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10043992
Hbnr11_m
Heligmosomoides bakeri nematode resistance 11 (mouse)
Not determined
8
66326836
100326976
Mouse
14696809
Rbcn3_m
rod bipolar cell number 3 (mouse)
8
95056628
102856632
Mouse
1357470
Obq16_m
obesity QTL 16 (mouse)
Not determined
8
76411976
110412125
Mouse
1558875
Eae31_m
experimental allergic encephalomyelitis susceptibility 31 (mouse)
Not determined
8
35109930
115563747
Mouse
1357787
Vtbt5_m
vertebral trabecular bone trait 5 (mouse)
Not determined
8
66084397
100084549
Mouse
1301767
Fcsa2_m
femoral cross-sectional area 2 (mouse)
Not determined
8
71032003
105032123
Mouse
10412234
Nhdlq14_m
non-HDL QTL 14 (mouse)
Not determined
8
76411976
110412125
Mouse
1301766
Desp1_m
despair 1 (mouse)
Not determined
8
85486208
119486373
Mouse
1301253
Skmw2_m
skeletal muscle weight 2 (mouse)
Not determined
8
86443553
120443701
Mouse
4140967
Bmd39_m
bone mineral density 39 (mouse)
Not determined
8
32506572
117965439
Mouse
1357708
Orq1_m
ovulation rate QTL 1 (mouse)
Not determined
8
71740461
124622354
Mouse
4141285
Tgq18_m
triglyceride QTL 18 (mouse)
Not determined
64186736
98186736
Mouse
4141797
Skmw16_m
skeletal muscle weight 16 (mouse)
Not determined
8
64666176
98666325
Mouse
10755519
Wbc1_m
white blood cell count 1 (mouse)
8
82345783
116345783
Mouse
27226754
Femd6_m
femur midshaft diameter 6, 10 week (mouse)
8
37867154
110326632
Mouse
1301581
Char2_m
P. chabaudi malaria resistance QTL 2 (mouse)
Not determined
8
79808806
113809031
Mouse
1301874
Hdlq16_m
HDL QTL 16 (mouse)
Not determined
8
76411976
110412125
Mouse
1301872
Cd4ts3_m
CD4 T cell subset 3 (mouse)
Not determined
8
72122809
106123021
Mouse
10045619
Heal14_m
wound healing/regeneration 14 (mouse)
Not determined
8
86443553
120443701
Mouse
1301688
Orch6_m
autoimmune orchitis resistance 6 (mouse)
Not determined
8
61513479
95513605
Mouse
1558780
Idd22_m
insulin dependent diabetes susceptibility 22 (mouse)
Not determined
8
71829531
105829637
Mouse
1300920
Pitm3_m
prion incubation time 3 (mouse)
Not determined
8
73929123
107929226
Mouse
10755530
Wbc2_m
white blood cell count 2 (mouse)
8
81819296
115819296
Mouse
1302049
Heal1_m
wound healing/regeneration 1 (mouse)
Not determined
8
86443553
120443701
Mouse
27226796
Scvln16_m
sacral vertebrae length 2, 16 week (mouse)
8
89726628
130027694
Mouse
4142283
Imraq2_m
immune response to AAV2 QTL 2 (mouse)
Not determined
8
71032003
105032123
Mouse
27095912
Pglq14_m
pelvic girdle length QTL 14, 16 week (mouse)
8
74126628
126826739
Mouse
4142023
W3q5_m
weight 3 weeks QTL 5 (mouse)
Not determined
71740461
124622354
Mouse
1301099
Cbm2_m
cerebellum weight 2 (mouse)
Not determined
8
79245241
113245331
Mouse
1558890
Lith18_m
lithogenic gene 18 (mouse)
Not determined
8
76402145
110402251
Mouse
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Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
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Sequence
Nucleotide Sequences
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GenBank Nucleotide
AC123826
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
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5
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Additional Information
External Database Links
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Database
Acc Id
Source(s)
MGD
MGI:4413935
ENTREZGENE
NCBI Gene
n-Tl17
ENTREZGENE
PhenoGen
n-TLcag5
PhenoGen
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Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2016-03-21
n-TLcag5
nuclear encoded tRNA leucine 5 (anticodon CAG)
n-Tl17
nuclear encoded tRNA leucine 17 (anticodon CAG)
Symbol and/or name change
5135510
APPROVED