Gosr1 (golgi SNAP receptor complex member 1) - Rat Genome Database

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Gene: Gosr1 (golgi SNAP receptor complex member 1) Mus musculus
Analyze
Symbol: Gosr1
Name: golgi SNAP receptor complex member 1
RGD ID: 737607
MGI Page MGI
Description: Predicted to have SNAP receptor activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; regulation of vesicle targeting, to, from or within Golgi; and retrograde transport, endosome to Golgi. Localizes to Golgi membrane. Orthologous to human GOSR1 (golgi SNAP receptor complex member 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 28 kDa cis-Golgi SNARE p28; 28 kDa Golgi SNARE protein; AI414660; AI426320; BB145494; Cis-Golgi SNARE; GOS-; GOS-28; GOSRI; GS2; GS28
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18727  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,617,428 - 76,654,404 (-)NCBIGRCm39mm39
GRCm39 Ensembl1176,617,428 - 76,654,405 (-)Ensembl
GRCm381176,726,602 - 76,763,578 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,726,602 - 76,763,579 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,540,104 - 76,577,057 (-)NCBIGRCm37mm9NCBIm37
MGSCv361176,542,797 - 76,579,750 (-)NCBImm8
Celera1184,231,593 - 84,268,518 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9705316   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11323436   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15728249   PMID:16141072   PMID:16141073  
PMID:21677750   PMID:21873635   PMID:29437892   PMID:30550785   PMID:32968282  


Genomics

Comparative Map Data
Gosr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,617,428 - 76,654,404 (-)NCBIGRCm39mm39
GRCm39 Ensembl1176,617,428 - 76,654,405 (-)Ensembl
GRCm381176,726,602 - 76,763,578 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,726,602 - 76,763,579 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,540,104 - 76,577,057 (-)NCBIGRCm37mm9NCBIm37
MGSCv361176,542,797 - 76,579,750 (-)NCBImm8
Celera1184,231,593 - 84,268,518 (-)NCBICelera
Cytogenetic Map11B5NCBI
GOSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1730,477,362 - 30,527,592 (+)EnsemblGRCh38hg38GRCh38
GRCh381730,477,402 - 30,527,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371728,804,426 - 28,854,610 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361725,828,552 - 25,877,958 (+)NCBINCBI36hg18NCBI36
Build 341725,828,551 - 25,877,957NCBI
Celera1725,665,931 - 25,715,342 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1725,014,453 - 25,063,857 (+)NCBIHuRef
CHM1_11728,866,903 - 28,916,561 (+)NCBICHM1_1
Gosr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21061,570,499 - 61,607,287 (-)NCBI
Rnor_6.0 Ensembl1063,405,586 - 63,442,250 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01063,405,526 - 63,442,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01063,104,203 - 63,140,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41067,407,203 - 67,442,601 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11067,420,825 - 67,456,224 (+)NCBI
Celera1060,583,884 - 60,619,004 (-)NCBICelera
Cytogenetic Map10q24NCBI
Gosr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554812,831,118 - 2,876,756 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554812,831,118 - 2,876,756 (-)NCBIChiLan1.0ChiLan1.0
GOSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11726,769,855 - 26,813,775 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1726,769,855 - 26,813,775 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01726,248,771 - 26,293,872 (-)NCBIMhudiblu_PPA_v0panPan3
GOSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1944,478,826 - 44,537,405 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl944,478,949 - 44,532,170 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha943,630,206 - 43,687,357 (+)NCBI
ROS_Cfam_1.0945,296,378 - 45,353,553 (+)NCBI
UMICH_Zoey_3.1944,076,318 - 44,133,438 (+)NCBI
UNSW_CanFamBas_1.0944,362,740 - 44,419,640 (+)NCBI
UU_Cfam_GSD_1.0944,449,010 - 44,506,170 (+)NCBI
Gosr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560243,583,649 - 43,629,206 (+)NCBI
SpeTri2.0NW_0049365386,461,676 - 6,505,967 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOSR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,541,226 - 46,611,532 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,541,124 - 46,597,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,630,970 - 48,684,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOSR1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11624,206,226 - 24,256,628 (+)NCBI
ChlSab1.1 Ensembl1624,206,296 - 24,254,812 (+)Ensembl
Gosr1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247862,952,315 - 3,000,952 (+)NCBI

Position Markers
BB145494  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,728,590 - 76,728,670UniSTSGRCm38
MGSCv371176,542,092 - 76,542,172UniSTSGRCm37
Celera1184,233,582 - 84,233,662UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11960.71UniSTS
AI414660  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,727,030 - 76,727,117UniSTSGRCm38
MGSCv371176,540,532 - 76,540,619UniSTSGRCm37
Celera1184,232,021 - 84,232,108UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11959.28UniSTS
AF079901  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,729,842 - 76,729,959UniSTSGRCm38
MGSCv371176,543,344 - 76,543,461UniSTSGRCm37
Celera1184,234,834 - 84,234,951UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11962.33UniSTS
AI426320  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381176,726,781 - 76,726,861UniSTSGRCm38
MGSCv371176,540,283 - 76,540,363UniSTSGRCm37
Celera1184,231,772 - 84,231,852UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11962.33UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1557
Count of miRNA genes:709
Interacting mature miRNAs:901
Transcripts:ENSMUST00000010536, ENSMUST00000137767
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000010536   ⟹   ENSMUSP00000010536
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,726,602 - 76,763,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1176,748,508 - 76,763,567 (-)Ensembl
RefSeq Acc Id: NM_001356321   ⟹   NP_001343250
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,617,428 - 76,654,404 (-)NCBI
GRCm381176,726,602 - 76,763,578 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016810   ⟹   NP_058090
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391176,617,428 - 76,654,404 (-)NCBI
GRCm381176,726,602 - 76,763,578 (-)NCBI
MGSCv371176,540,104 - 76,577,057 (-)RGD
Celera1184,231,593 - 84,268,518 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058090   ⟸   NM_016810
- Peptide Label: isoform 1
- UniProtKB: O88630 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001343250   ⟸   NM_001356321
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000010536   ⟸   ENSMUST00000010536

Promoters
RGD ID:6821000
Promoter ID:MM_KWN:8574
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000014084,   OTTMUST00000014085
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361176,576,586 - 76,577,097 (-)MPROMDB
RGD ID:8675618
Promoter ID:EPDNEW_M15836
Type:multiple initiation site
Name:Gosr1_1
Description:Mus musculus golgi SNAP receptor complex member 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381176,763,567 - 76,763,627EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858260 AgrOrtholog
Ensembl Genes ENSMUSG00000010392 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000010536 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000010536 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Golgi_SNAP_su1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53334 UniProtKB/Swiss-Prot
MGD MGI:1858260 ENTREZGENE
NCBI Gene 53334 ENTREZGENE
PANTHER PTHR21094 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gosr1 PhenoGen
PIRSF Golgi_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GOSR1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80UU0_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q91VU9 UniProtKB/Swiss-Prot