Kcns1 (K+ voltage-gated channel, subfamily S, 1) - Rat Genome Database

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Gene: Kcns1 (K+ voltage-gated channel, subfamily S, 1) Mus musculus
Analyze
Symbol: Kcns1
Name: K+ voltage-gated channel, subfamily S, 1
RGD ID: 735721
MGI Page MGI
Description: Enables potassium channel regulator activity. Involved in potassium ion transport and regulation of potassium ion transmembrane transport. Located in perinuclear region of cytoplasm and plasma membrane. Part of voltage-gated potassium channel complex. Orthologous to human KCNS1 (potassium voltage-gated channel modifier subfamily S member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: delayed-rectifier K(+) channel alpha subunit 1; Kv9.; Kv9.1; potassium voltage-gated channel subfamily S member 1; voltage-gated potassium channel subunit Kv9.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,005,539 - 164,013,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,005,539 - 164,013,033 (-)EnsemblGRCm39 Ensembl
GRCm382164,163,619 - 164,171,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,163,619 - 164,171,113 (-)EnsemblGRCm38mm10GRCm38
MGSCv372163,989,355 - 163,996,849 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362163,855,746 - 163,862,530 (-)NCBIMGSCv36mm8
Celera2170,095,175 - 170,102,667 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map284.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Human neuronal changes in brain edema and increased intracranial pressure. Faragó N, etal., Acta Neuropathol Commun. 2016 Aug 4;4(1):78. doi: 10.1186/s40478-016-0356-x.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. New modulatory alpha subunits for mammalian Shab K+ channels. Salinas M, etal., J Biol Chem 1997 Sep 26;272(39):24371-9.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:16141072   PMID:16141073   PMID:16985003   PMID:21873635   PMID:25798587   PMID:29697531   PMID:32325033  
PMID:38355793  


Genomics

Comparative Map Data
Kcns1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,005,539 - 164,013,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,005,539 - 164,013,033 (-)EnsemblGRCm39 Ensembl
GRCm382164,163,619 - 164,171,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,163,619 - 164,171,113 (-)EnsemblGRCm38mm10GRCm38
MGSCv372163,989,355 - 163,996,849 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362163,855,746 - 163,862,530 (-)NCBIMGSCv36mm8
Celera2170,095,175 - 170,102,667 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map284.6NCBI
KCNS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,091,214 - 45,101,127 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,091,214 - 45,101,127 (-)EnsemblGRCh38hg38GRCh38
GRCh372043,719,855 - 43,729,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,154,364 - 43,163,167 (-)NCBINCBI36Build 36hg18NCBI36
Build 342043,154,363 - 43,163,167NCBI
Celera2040,429,593 - 40,438,396 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2040,462,848 - 40,471,652 (-)NCBIHuRef
CHM1_12043,623,697 - 43,632,500 (-)NCBICHM1_1
T2T-CHM13v2.02046,827,118 - 46,837,031 (-)NCBIT2T-CHM13v2.0
Kcns1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,255,028 - 173,262,432 (-)NCBIGRCr8
mRatBN7.23152,835,642 - 152,843,032 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3152,835,644 - 152,842,960 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3156,643,137 - 156,650,455 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,142,074 - 165,149,392 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03162,886,437 - 162,893,887 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,554,423 - 160,561,820 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,554,425 - 160,561,741 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03166,739,097 - 166,746,473 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,103,400 - 155,110,718 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,009,435 - 155,016,754 (-)NCBI
Celera3151,483,732 - 151,491,050 (-)NCBICelera
Cytogenetic Map3q42NCBI
Kcns1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544512,293,394 - 12,299,787 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544512,293,394 - 12,299,741 (+)NCBIChiLan1.0ChiLan1.0
KCNS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22150,825,312 - 50,834,225 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12050,818,419 - 50,827,322 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,422,847 - 41,431,752 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,514,300 - 42,524,341 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,515,401 - 42,524,192 (-)Ensemblpanpan1.1panPan2
KCNS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,472,292 - 32,478,986 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,474,881 - 32,479,717 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,117,691 - 32,124,386 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,183,125 - 33,189,820 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,183,110 - 33,190,552 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,444,433 - 32,451,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,559,506 - 32,568,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,101,321 - 33,108,016 (-)NCBIUU_Cfam_GSD_1.0
Kcns1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,217,629 - 192,224,162 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,671,264 - 7,678,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,671,664 - 7,677,806 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,483,947 - 47,492,567 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,483,943 - 47,491,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,101,856 - 53,108,983 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,715,666 - 18,724,955 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605067,365,392 - 67,375,593 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcns1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,399,965 - 9,407,376 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,399,267 - 9,405,503 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:410
Count of miRNA genes:298
Interacting mature miRNAs:333
Transcripts:ENSMUST00000045196
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160611165169794802Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160611165169794802Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000045196   ⟹   ENSMUSP00000038901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2164,005,539 - 164,013,033 (-)Ensembl
GRCm38.p6 Ensembl2164,163,619 - 164,171,113 (-)Ensembl
RefSeq Acc Id: NM_008435   ⟹   NP_032461
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392164,005,539 - 164,013,033 (-)NCBI
GRCm382164,163,619 - 164,171,113 (-)ENTREZGENE
MGSCv372163,989,355 - 163,996,849 (-)RGD
Celera2170,095,175 - 170,102,667 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036158792   ⟹   XP_036014685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392164,005,539 - 164,013,865 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_032461 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014685 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB72050 (Get FASTA)   NCBI Sequence Viewer  
  BAE34714 (Get FASTA)   NCBI Sequence Viewer  
  EDL06364 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000038901
  ENSMUSP00000038901.4
GenBank Protein O35173 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032461   ⟸   NM_008435
- UniProtKB: A2A5M1 (UniProtKB/Swiss-Prot),   O35173 (UniProtKB/Swiss-Prot),   Q3TY49 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000038901   ⟸   ENSMUST00000045196
RefSeq Acc Id: XP_036014685   ⟸   XM_036158792
- Peptide Label: isoform X1
- UniProtKB: O35173 (UniProtKB/Swiss-Prot),   A2A5M1 (UniProtKB/Swiss-Prot),   Q3TY49 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35173-F1-model_v2 AlphaFold O35173 1-497 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1197019 AgrOrtholog
Ensembl Genes ENSMUSG00000040164 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045196 ENTREZGENE
  ENSMUST00000045196.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16538 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1197019 ENTREZGENE
NCBI Gene 16538 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY S MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11537 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kcns1 PhenoGen
PRINTS KCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KV9CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A5M1 ENTREZGENE
  KCNS1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TY49 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2A5M1 UniProtKB/Swiss-Prot