ARHGEF34P (Rho guanine nucleotide exchange factor 34, pseudogene) - Rat Genome Database

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Gene: ARHGEF34P (Rho guanine nucleotide exchange factor 34, pseudogene) Homo sapiens
Analyze
Symbol: ARHGEF34P
Name: Rho guanine nucleotide exchange factor 34, pseudogene
RGD ID: 7243794
HGNC Page HGNC:38086
Description: INTERACTS WITH ivermectin; sodium arsenite
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: ARHGEF5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387144,258,996 - 144,286,003 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7144,272,445 - 144,286,966 (-)EnsemblGRCh38hg38GRCh38
GRCh377143,956,089 - 143,983,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367143,593,917 - 143,598,945 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map7q35NCBI
HuRef7138,089,777 - 138,090,413 (+)NCBIHuRef
CHM1_17143,893,476 - 143,920,483 (-)NCBICHM1_1
CRA_TCAGchr7v27143,294,347 - 143,321,354 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9847074   PMID:12477932   PMID:15252450   PMID:29117863  


Genomics

Variants

.
Variants in ARHGEF34P
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:192
Interacting mature miRNAs:196
Transcripts:ENST00000378112, ENST00000483587
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559221SCL67_HSerum cholesterol level QTL 67 (human)2.980.002Lipid leveltriglyceride7141776251159345973Human
1559237SCL70_HSerum cholesterol level QTL 70 (human)3.520.002Lipid leveltriglyceride7141776251159345973Human
1578618SCL127_HSerum cholesterol level QTL 127 (human)3.7Lipid leveltriglyceride7141776251159345973Human
1559218SCL69_HSerum cholesterol level QTL 69 (human)3.410.002Lipid leveltriglyceride7141776251159345973Human
1559232SCL66_HSerum cholesterol level QTL 66 (human)2.980.002Lipid leveltriglyceride7141776251159345973Human
1559264SCL68_HSerum cholesterol level QTL 68 (human)3.10.002Lipid leveltriglyceride7141776251159345973Human
1559263SCL72_HSerum cholesterol level QTL 72 (human)3.25Lipid leveltriglyceride7141776251159345973Human
1559213SCL71_HSerum cholesterol level QTL 71 (human)3.46Lipid leveltriglyceride7141776251159345973Human
1578610SCL128_HSerum cholesterol level QTL 128 (human)2.2Lipid levelLDL cholesterol7141776251159345973Human

Markers in Region
RH103260  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377144,072,935 - 144,073,064UniSTSGRCh37
GRCh377143,970,757 - 143,970,886UniSTSGRCh37
Build 367143,601,690 - 143,601,819RGDNCBI36
Celera7138,746,979 - 138,747,108RGD
Cytogenetic Map7q35UniSTS
HuRef7138,151,089 - 138,151,218UniSTS
CRA_TCAGchr7v27143,411,194 - 143,411,323UniSTS
CRA_TCAGchr7v27143,309,015 - 143,309,144UniSTS
GeneMap99-GB4 RH Map7658.07UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2427 2743 2213 4762 1717 2300 4 618 1619 460 2246 6897 6122 42 3537 843 1719 1570 171

Sequence


Ensembl Acc Id: ENST00000483587
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7144,272,445 - 144,286,966 (-)Ensembl
RefSeq Acc Id: NR_033942
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387144,258,996 - 144,286,003 (-)NCBI
GRCh377143,956,089 - 143,983,096 (-)NCBI
HuRef7138,089,777 - 138,090,413 (+)NCBI
CHM1_17143,893,476 - 143,920,483 (-)NCBI
CRA_TCAGchr7v27143,294,347 - 143,321,354 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein AAI07872 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
COSMIC ARHGEF34P COSMIC
Ensembl Genes ENSG00000204959 Ensembl
GTEx ENSG00000204959 GTEx
HGNC ID HGNC:38086 ENTREZGENE
Human Proteome Map ARHGEF34P Human Proteome Map
NCBI Gene ARHGEF34P ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 ARHGEF34P  Rho guanine nucleotide exchange factor 34, pseudogene    Rho guanine nucleotide exchange factor (GEF) 34, pseudogene  Symbol and/or name change 5135510 APPROVED