ARL6IP1P3 (ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3) - Rat Genome Database

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Gene: ARL6IP1P3 (ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3) Homo sapiens
Analyze
Symbol: ARL6IP1P3
Name: ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3
RGD ID: 7205183
HGNC Page HGNC:44972
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ARL6IP1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381180,653,125 - 80,654,063 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1180,653,429 - 80,653,988 (-)EnsemblGRCh38hg38GRCh38
GRCh371180,364,169 - 80,365,107 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361180,042,114 - 80,042,775 (-)NCBINCBI36Build 36hg18NCBI36
Celera1177,673,406 - 77,673,965 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1176,660,620 - 76,661,182 (-)NCBIHuRef
CHM1_11180,247,245 - 80,247,807 (-)NCBICHM1_1
T2T-CHM13v2.01180,587,866 - 80,588,807 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:164
Interacting mature miRNAs:165
Transcripts:ENST00000524544
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 5 5 1 125 1 6 21 4 9 9 1 5
Below cutoff 201 230 240 76 151 62 366 107 812 113 188 206 15 150 204

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000524544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1180,653,429 - 80,653,988 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ARL6IP1P3 COSMIC
Ensembl Genes ENSG00000255014 Ensembl
GTEx ENSG00000255014 GTEx
HGNC ID HGNC:44972 ENTREZGENE
Human Proteome Map ARL6IP1P3 Human Proteome Map
NCBI Gene ARL6IP1P3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 ARL6IP1P3  ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3    ADP-ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3  Symbol and/or name change 5135510 APPROVED
2015-11-17 ARL6IP1P3  ADP-ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3    ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 3  Symbol and/or name change 5135510 APPROVED