ARL6IP1P2 (ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ARL6IP1P2 (ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2) Homo sapiens
Analyze
Symbol: ARL6IP1P2
Name: ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2
RGD ID: 7205015
HGNC Page HGNC:44971
Description: INTERACTS WITH cadmium dichloride
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ARL6IP1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381036,994,944 - 36,995,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1036,995,023 - 36,995,585 (+)EnsemblGRCh38hg38GRCh38
GRCh371037,283,872 - 37,284,815 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361037,323,858 - 37,324,524 (+)NCBINCBI36Build 36hg18NCBI36
Celera1037,049,964 - 37,050,528 (+)NCBICelera
Cytogenetic Map10p11.21NCBI
HuRef1037,003,820 - 37,004,384 (+)NCBIHuRef
CHM1_11037,284,004 - 37,284,568 (+)NCBICHM1_1
T2T-CHM13v2.01037,027,091 - 37,028,034 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:170
Interacting mature miRNAs:171
Transcripts:ENST00000431356
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 20 6 13 8 2 6 6
Below cutoff 271 363 265 75 189 55 675 167 1008 71 340 252 20 296 396

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000431356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1036,995,023 - 36,995,585 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ARL6IP1P2 COSMIC
Ensembl Genes ENSG00000225355 Ensembl
GTEx ENSG00000225355 GTEx
HGNC ID HGNC:44971 ENTREZGENE
Human Proteome Map ARL6IP1P2 Human Proteome Map
NCBI Gene ARL6IP1P2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 ARL6IP1P2  ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2    ADP-ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2  Symbol and/or name change 5135510 APPROVED
2015-11-17 ARL6IP1P2  ADP-ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2    ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 2  Symbol and/or name change 5135510 APPROVED