HSPA8P16 (heat shock protein family A (Hsp70) member 8 pseudogene 16) - Rat Genome Database

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Gene: HSPA8P16 (heat shock protein family A (Hsp70) member 8 pseudogene 16) Homo sapiens
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Symbol: HSPA8P16
Name: heat shock protein family A (Hsp70) member 8 pseudogene 16
RGD ID: 7204966
HGNC Page HGNC:44931
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HSPA8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38785,027,751 - 85,029,940 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl785,027,828 - 85,029,692 (+)EnsemblGRCh38hg38GRCh38
GRCh37784,657,067 - 84,659,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera779,361,105 - 79,363,235 (+)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef779,266,540 - 79,268,727 (+)NCBIHuRef
CHM1_1784,587,249 - 84,589,436 (+)NCBICHM1_1
T2T-CHM13v2.0786,277,583 - 86,279,772 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2783,988,954 - 83,991,141 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in HSPA8P16
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:67
Interacting mature miRNAs:69
Transcripts:ENST00000454171
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407000641GWAS649617_Hneuroimaging measurement QTL GWAS649617 (human)5e-09neuroimaging measurement78502873185028732Human
406899972GWAS548948_Hwhite matter microstructure measurement QTL GWAS548948 (human)4e-21white matter microstructure measurement78502873185028732Human
406905487GWAS554463_Hneuroimaging measurement QTL GWAS554463 (human)6e-49neuroimaging measurement78502873185028732Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
387 746 933 849 1358 676 804 107 482 60 495 2199 2056 2 1153 189 610 654 49

Sequence


Ensembl Acc Id: ENST00000454171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl785,027,828 - 85,029,692 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HSPA8P16 COSMIC
Ensembl Genes ENSG00000224059 Ensembl
GTEx ENSG00000224059 GTEx
HGNC ID HGNC:44931 ENTREZGENE
Human Proteome Map HSPA8P16 Human Proteome Map
NCBI Gene HSPA8P16 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HSPA8P16  heat shock protein family A (Hsp70) member 8 pseudogene 16    heat shock 70kDa protein 8 pseudogene 16  Symbol and/or name change 5135510 APPROVED