DCTN1-AS1 (DCTN1 antisense RNA 1) - Rat Genome Database

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Gene: DCTN1-AS1 (DCTN1 antisense RNA 1) Homo sapiens
Analyze
Symbol: DCTN1-AS1
Name: DCTN1 antisense RNA 1
RGD ID: 6770566
HGNC Page HGNC:44151
Description: INTERACTS WITH nickel atom
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC005041.9
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,385,503 - 74,398,668 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,385,474 - 74,393,882 (+)EnsemblGRCh38hg38GRCh38
GRCh37274,612,630 - 74,625,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera274,444,035 - 74,452,198 (+)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,349,158 - 74,357,321 (+)NCBIHuRef
CHM1_1274,542,272 - 74,550,435 (+)NCBICHM1_1
T2T-CHM13v2.0274,394,062 - 74,407,241 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DCTN1-AS1Humannickel atom decreases expressionEXP 6480464Nickel results in decreased expression of DCTN1-AS1 mRNACTDPMID:24768652 and PMID:25583101


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932  



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Variants in DCTN1-AS1
1 total Variants

Predicted Target Of
Summary Value
Count of predictions:1042
Count of miRNA genes:655
Interacting mature miRNAs:749
Transcripts:ENST00000412957, ENST00000416630, ENST00000418990, ENST00000426715, ENST00000427343, ENST00000437991
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597025541GWAS1121615_Hserum alanine aminotransferase measurement, response to combination chemotherapy QTL GWAS1121615 (human)0.000002serum alanine aminotransferase measurement, response to combination chemotherapyserum alanine aminotransferase activity level (CMO:0000575)27439526274395263Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
907 2202 1853 1538 4592 1274 1720 3 319 1102 173 1786 4622 4423 47 3676 629 1551 1326 161 1



Ensembl Acc Id: ENST00000412957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,524 - 74,392,896 (+)Ensembl
Ensembl Acc Id: ENST00000416630
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,486 - 74,388,178 (+)Ensembl
Ensembl Acc Id: ENST00000418990
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,496 - 74,391,427 (+)Ensembl
Ensembl Acc Id: ENST00000426715
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,497 - 74,391,904 (+)Ensembl
Ensembl Acc Id: ENST00000427343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,493 - 74,393,511 (+)Ensembl
Ensembl Acc Id: ENST00000437991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,718 - 74,393,882 (+)Ensembl
Ensembl Acc Id: ENST00000664266
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,474 - 74,393,859 (+)Ensembl
Ensembl Acc Id: ENST00000664792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl274,385,693 - 74,393,524 (+)Ensembl
RefSeq Acc Id: NR_024463
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,385,503 - 74,393,881 (+)NCBI
GRCh37274,612,845 - 74,621,008 (+)NCBI
HuRef274,349,158 - 74,357,321 (+)NCBI
CHM1_1274,542,272 - 74,550,435 (+)NCBI
T2T-CHM13v2.0274,394,062 - 74,402,454 (+)NCBI
Sequence:
RefSeq Acc Id: NR_158172
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,385,503 - 74,393,881 (+)NCBI
T2T-CHM13v2.0274,394,062 - 74,402,454 (+)NCBI
Sequence:
RefSeq Acc Id: NR_158173
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,385,503 - 74,393,881 (+)NCBI
T2T-CHM13v2.0274,394,062 - 74,402,454 (+)NCBI
Sequence:
RefSeq Acc Id: NR_158174
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,385,503 - 74,398,668 (+)NCBI
T2T-CHM13v2.0274,394,062 - 74,407,241 (+)NCBI
Sequence:
RGD ID:15095454
Promoter ID:EPDNEWNC_H278
Type:initiation region
Name:DCTN1-AS1_1
Description:DCTN1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44151]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38274,385,509 - 74,385,569EPDNEWNC


1 to 21 of 21 rows
Database
Acc Id
Source(s)
COSMIC DCTN1-AS1 COSMIC
Ensembl Genes ENSG00000237737 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000427343 ENTREZGENE
  ENST00000437991 ENTREZGENE
  ENST00000664266 ENTREZGENE
GTEx ENSG00000237737 GTEx
HGNC ID HGNC:44151 ENTREZGENE
Human Proteome Map DCTN1-AS1 Human Proteome Map
NCBI Gene DCTN1-AS1 ENTREZGENE
RNAcentral URS0000086B1B RNACentral
  URS000032D362 RNACentral
  URS0000506F58 RNACentral
  URS0000535E89 RNACentral
  URS0000D77F4C RNACentral
  URS0000D77F6E RNACentral
  URS0000D78088 RNACentral
  URS0000D780AE RNACentral
  URS0000EED20C RNACentral
  URS0000EED4C9 RNACentral
  URS0000EF2DDE RNACentral
  URS0000EF5A01 RNACentral
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 DCTN1-AS1  DCTN1 antisense RNA 1  DCTN1-AS1  DCTN1 antisense RNA 1 (non-protein coding)  Symbol and/or name change 5135510 APPROVED