ARL5AP1 (ARL5A pseudogene 1) - Rat Genome Database

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Gene: ARL5AP1 (ARL5A pseudogene 1) Homo sapiens
Analyze
Symbol: ARL5AP1
Name: ARL5A pseudogene 1
RGD ID: 6769531
HGNC Page HGNC:43933
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ADP ribosylation factor like GTPase 5A pseudogene 1; RP11-320L24.1-001
Related Functional Gene: ARL5A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,183,482 - 119,186,961 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX119,186,442 - 119,186,829 (-)EnsemblGRCh38hg38GRCh38
GRCh37X118,317,445 - 118,320,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X118,201,527 - 118,205,090 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX118,772,176 - 118,775,734 (-)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX107,810,912 - 107,814,471 (-)NCBIHuRef
CHM1_1X118,228,670 - 118,232,227 (-)NCBICHM1_1
T2T-CHM13v2.0X117,561,222 - 117,564,698 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:76
Interacting mature miRNAs:78
Transcripts:ENST00000418991
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 3 4 1
Below cutoff 26 29 20 8 14 7 48 23 26 2 135 11 1 13 30

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000418991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX119,186,442 - 119,186,829 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ARL5AP1 COSMIC
Ensembl Genes ENSG00000227864 Ensembl
GTEx ENSG00000227864 GTEx
HGNC ID HGNC:43933 ENTREZGENE
Human Proteome Map ARL5AP1 Human Proteome Map
NCBI Gene ARL5AP1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-25 ARL5AP1  ARL5A pseudogene 1  ARL5AP1  ADP ribosylation factor like GTPase 5A pseudogene 1  Symbol and/or name change 19259463 PROVISIONAL
2015-11-24 ARL5AP1  ADP ribosylation factor like GTPase 5A pseudogene 1    ADP-ribosylation factor like GTPase 5A pseudogene 1  Symbol and/or name change 5135510 APPROVED
2015-11-17 ARL5AP1  ADP-ribosylation factor like GTPase 5A pseudogene 1    ADP-ribosylation factor-like 5A pseudogene 1  Symbol and/or name change 5135510 APPROVED