RNA5SP91 (RNA, 5S ribosomal pseudogene 91) - Rat Genome Database

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Gene: RNA5SP91 (RNA, 5S ribosomal pseudogene 91) Homo sapiens
Analyze
Symbol: RNA5SP91
Name: RNA, 5S ribosomal pseudogene 91
RGD ID: 6482016
HGNC Page HGNC:42889
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S91
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38233,285,769 - 33,285,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl233,285,769 - 33,285,887 (-)EnsemblGRCh38hg38GRCh38
GRCh37233,510,836 - 33,510,954 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p22.3NCBI
HuRef233,244,581 - 33,244,699 (-)NCBIHuRef
CHM1_1233,440,260 - 33,440,378 (-)NCBICHM1_1
T2T-CHM13v2.0233,331,839 - 33,331,957 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:175
Interacting mature miRNAs:177
Transcripts:ENST00000390902
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1
Low 37 187 6 5 14 3 74 17 19 9 36 30 2 3 61
Below cutoff 102 216 18 8 10 5 145 78 48 4 39 31 3 27 126 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000390902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl233,285,769 - 33,285,887 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP91 COSMIC
Ensembl Genes ENSG00000212204 Ensembl, ENTREZGENE
GTEx ENSG00000212204 GTEx
HGNC ID HGNC:42889 ENTREZGENE
Human Proteome Map RNA5SP91 Human Proteome Map
NCBI Gene RN5S91 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP91  RNA, 5S ribosomal pseudogene 91  RN5S91  RNA, 5S ribosomal 91  Symbol and/or name change 5135510 APPROVED