RNA5SP30 (RNA, 5S ribosomal pseudogene 30) - Rat Genome Database

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Gene: RNA5SP30 (RNA, 5S ribosomal pseudogene 30) Homo sapiens
Analyze
Symbol: RNA5SP30
Name: RNA, 5S ribosomal pseudogene 30
RGD ID: 6481925
HGNC Page HGNC:42606
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S30
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381357,991,350 - 57,991,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1357,991,350 - 57,991,464 (+)EnsemblGRCh38hg38GRCh38
GRCh371358,565,484 - 58,565,598 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q21.1NCBI
HuRef1339,247,345 - 39,247,459 (+)NCBIHuRef
T2T-CHM13v2.01357,207,555 - 57,207,669 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:204
Interacting mature miRNAs:212
Transcripts:ENST00000365552
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 5 2 1 14 1 4 2 6 13 3 1 1
Below cutoff 9 2 1 2 1 4 3 2 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000365552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1357,991,350 - 57,991,464 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP30 COSMIC
Ensembl Genes ENSG00000202422 Ensembl, ENTREZGENE
GTEx ENSG00000202422 GTEx
HGNC ID HGNC:42606 ENTREZGENE
Human Proteome Map RNA5SP30 Human Proteome Map
NCBI Gene RN5S30 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP30  RNA, 5S ribosomal pseudogene 30  RN5S30  RNA, 5S ribosomal 30  Symbol and/or name change 5135510 APPROVED