RNA5SP234 (RNA, 5S ribosomal pseudogene 234) - Rat Genome Database

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Gene: RNA5SP234 (RNA, 5S ribosomal pseudogene 234) Homo sapiens
Analyze
Symbol: RNA5SP234
Name: RNA, 5S ribosomal pseudogene 234
RGD ID: 6481855
HGNC Page HGNC:43134
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S234
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38779,654,109 - 79,654,227 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl779,654,109 - 79,654,227 (+)EnsemblGRCh38hg38GRCh38
GRCh37779,283,425 - 79,283,543 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q21.11NCBI
HuRef773,885,969 - 73,886,087 (+)NCBIHuRef
CHM1_1779,213,507 - 79,213,625 (+)NCBICHM1_1
T2T-CHM13v2.0780,905,953 - 80,906,071 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2778,615,014 - 78,615,132 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:120
Interacting mature miRNAs:122
Transcripts:ENST00000363916
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 4 6 3 7 3 3 9 4 5 6 1 2
Below cutoff 2 34 5 1 5 1 20 5 22 5 25 5 3 16

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl779,654,109 - 79,654,227 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP234 COSMIC
Ensembl Genes ENSG00000200786 Ensembl, ENTREZGENE
GTEx ENSG00000200786 GTEx
HGNC ID HGNC:43134 ENTREZGENE
Human Proteome Map RNA5SP234 Human Proteome Map
NCBI Gene RN5S234 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP234  RNA, 5S ribosomal pseudogene 234  RN5S234  RNA, 5S ribosomal 234  Symbol and/or name change 5135510 APPROVED