RNA5SP286 (RNA, 5S ribosomal pseudogene 286) - Rat Genome Database

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Gene: RNA5SP286 (RNA, 5S ribosomal pseudogene 286) Homo sapiens
Analyze
Symbol: RNA5SP286
Name: RNA, 5S ribosomal pseudogene 286
RGD ID: 6481781
HGNC Page HGNC:43186
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S286
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38973,750,972 - 73,751,077 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl973,750,972 - 73,751,077 (-)EnsemblGRCh38hg38GRCh38
GRCh37976,365,888 - 76,365,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q21.13NCBI
CHM1_1976,512,672 - 76,512,777 (-)NCBICHM1_1
T2T-CHM13v2.0985,902,372 - 85,902,477 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:104
Interacting mature miRNAs:104
Transcripts:ENST00000391152
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 1 4 1 7 1 10 3 2 3 5 6 2 2
Below cutoff 6 3 4 8 9 4 4 1 1 7 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000391152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl973,750,972 - 73,751,077 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP286 COSMIC
Ensembl Genes ENSG00000212454 Ensembl, ENTREZGENE
GTEx ENSG00000212454 GTEx
HGNC ID HGNC:43186 ENTREZGENE
Human Proteome Map RNA5SP286 Human Proteome Map
NCBI Gene RN5S286 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP286  RNA, 5S ribosomal pseudogene 286  RN5S286  RNA, 5S ribosomal 286  Symbol and/or name change 5135510 APPROVED