RNA5SP281 (RNA, 5S ribosomal pseudogene 281) - Rat Genome Database

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Gene: RNA5SP281 (RNA, 5S ribosomal pseudogene 281) Homo sapiens
Analyze
Symbol: RNA5SP281
Name: RNA, 5S ribosomal pseudogene 281
RGD ID: 6481776
HGNC Page HGNC:43181
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S281
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38932,293,558 - 32,293,692 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl932,293,558 - 32,293,692 (+)EnsemblGRCh38hg38GRCh38
GRCh37932,293,556 - 32,293,690 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9p21.1NCBI
CHM1_1932,293,548 - 32,293,682 (+)NCBICHM1_1
T2T-CHM13v2.0932,309,276 - 32,309,410 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:69
Interacting mature miRNAs:70
Transcripts:ENST00000516504
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1
Low 8 1 4 2 3 2 3 7 8 9 14 7 2
Below cutoff 6 6 8 1 10 2 16 17 17 3 12 11 3 10

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl932,293,558 - 32,293,692 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP281 COSMIC
Ensembl Genes ENSG00000252313 Ensembl, ENTREZGENE
GTEx ENSG00000252313 GTEx
HGNC ID HGNC:43181 ENTREZGENE
Human Proteome Map RNA5SP281 Human Proteome Map
NCBI Gene RN5S281 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP281  RNA, 5S ribosomal pseudogene 281  RN5S281  RNA, 5S ribosomal 281  Symbol and/or name change 5135510 APPROVED