RNA5SP318 (RNA, 5S ribosomal pseudogene 318) - Rat Genome Database

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Gene: RNA5SP318 (RNA, 5S ribosomal pseudogene 318) Homo sapiens
Analyze
Symbol: RNA5SP318
Name: RNA, 5S ribosomal pseudogene 318
RGD ID: 6481732
HGNC Page HGNC:43218
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S318
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381053,458,197 - 53,458,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1053,458,197 - 53,458,288 (+)EnsemblGRCh38hg38GRCh38
GRCh371055,217,957 - 55,218,048 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q21.1NCBI
CHM1_11055,499,715 - 55,499,806 (+)NCBICHM1_1
T2T-CHM13v2.01054,306,939 - 54,307,030 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:84
Interacting mature miRNAs:86
Transcripts:ENST00000516352
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium
Low 2 8 6 1 2 1
Below cutoff 1 3 2 3 5 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516352
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1053,458,197 - 53,458,288 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP318 COSMIC
Ensembl Genes ENSG00000252161 Ensembl, ENTREZGENE
GTEx ENSG00000252161 GTEx
HGNC ID HGNC:43218 ENTREZGENE
Human Proteome Map RNA5SP318 Human Proteome Map
NCBI Gene RN5S318 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP318  RNA, 5S ribosomal pseudogene 318  RN5S318  RNA, 5S ribosomal 318  Symbol and/or name change 5135510 APPROVED