RNA5SP412 (RNA, 5S ribosomal pseudogene 412) - Rat Genome Database

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Gene: RNA5SP412 (RNA, 5S ribosomal pseudogene 412) Homo sapiens
Analyze
Symbol: RNA5SP412
Name: RNA, 5S ribosomal pseudogene 412
RGD ID: 6481721
HGNC Page HGNC:43312
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S412
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381635,746,772 - 35,746,894 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1635,746,772 - 35,746,894 (+)EnsemblGRCh38hg38GRCh38
GRCh371634,981,143 - 34,981,265 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p11.1NCBI
HuRef1631,734,199 - 31,734,321 (+)NCBIHuRef
CHM1_11636,321,973 - 36,322,095 (+)NCBICHM1_1
T2T-CHM13v2.01638,381,661 - 38,381,783 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:352
Count of miRNA genes:327
Interacting mature miRNAs:334
Transcripts:ENST00000516234
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system hepatobiliary system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 3 2 1 2 4 4 5 5
Below cutoff 1 1 2 6 9 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516234
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1635,746,772 - 35,746,894 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP412 COSMIC
Ensembl Genes ENSG00000277004 Ensembl, ENTREZGENE
GTEx ENSG00000277004 GTEx
HGNC ID HGNC:43312 ENTREZGENE
Human Proteome Map RNA5SP412 Human Proteome Map
NCBI Gene RN5S412 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP412  RNA, 5S ribosomal pseudogene 412  RN5S412  RNA, 5S ribosomal 412  Symbol and/or name change 5135510 APPROVED