RNA5SP410 (RNA, 5S ribosomal pseudogene 410) - Rat Genome Database

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Gene: RNA5SP410 (RNA, 5S ribosomal pseudogene 410) Homo sapiens
Analyze
Symbol: RNA5SP410
Name: RNA, 5S ribosomal pseudogene 410
RGD ID: 6481717
HGNC Page HGNC:43310
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S410
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381635,745,989 - 35,746,094 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1635,745,989 - 35,746,094 (+)EnsemblGRCh38hg38GRCh38
GRCh371634,980,360 - 34,980,465 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p11.1NCBI
HuRef1631,733,416 - 31,733,521 (+)NCBIHuRef
CHM1_11636,321,190 - 36,321,295 (+)NCBICHM1_1
T2T-CHM13v2.01638,382,461 - 38,382,566 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:271
Interacting mature miRNAs:277
Transcripts:ENST00000516285
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium 4
Low 3 3 3 4 4 4 2 5 18 42 8 2
Below cutoff 2 1 2 2 15 3 5 6 50 4 1 11

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1635,745,989 - 35,746,094 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP410 COSMIC
Ensembl Genes ENSG00000252094 Ensembl, ENTREZGENE
GTEx ENSG00000252094 GTEx
HGNC ID HGNC:43310 ENTREZGENE
Human Proteome Map RNA5SP410 Human Proteome Map
NCBI Gene RN5S410 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP410  RNA, 5S ribosomal pseudogene 410  RN5S410  RNA, 5S ribosomal 410  Symbol and/or name change 5135510 APPROVED