RNA5SP359 (RNA, 5S ribosomal pseudogene 359) - Rat Genome Database

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Gene: RNA5SP359 (RNA, 5S ribosomal pseudogene 359) Homo sapiens
Analyze
Symbol: RNA5SP359
Name: RNA, 5S ribosomal pseudogene 359
RGD ID: 6481673
HGNC Page HGNC:43259
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S359
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381238,163,403 - 38,163,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1238,163,403 - 38,163,515 (-)EnsemblGRCh38hg38GRCh38
GRCh371238,557,205 - 38,557,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q12NCBI
HuRef1235,582,331 - 35,582,443 (-)NCBIHuRef
CHM1_11238,522,782 - 38,522,894 (-)NCBICHM1_1
T2T-CHM13v2.01238,113,058 - 38,113,170 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:32513696  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:312
Count of miRNA genes:300
Interacting mature miRNAs:304
Transcripts:ENST00000364838
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 1 14 1 4 2 2 30 8 2 2
Below cutoff 2 1 6 1 2 1 5 2 10 2 64 6 5

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364838
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1238,163,403 - 38,163,515 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP359 COSMIC
Ensembl Genes ENSG00000201708 Ensembl, ENTREZGENE
GTEx ENSG00000201708 GTEx
HGNC ID HGNC:43259 ENTREZGENE
Human Proteome Map RNA5SP359 Human Proteome Map
NCBI Gene RN5S359 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP359  RNA, 5S ribosomal pseudogene 359  RN5S359  RNA, 5S ribosomal 359  Symbol and/or name change 5135510 APPROVED