RNA5SP451 (RNA, 5S ribosomal pseudogene 451) - Rat Genome Database

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Gene: RNA5SP451 (RNA, 5S ribosomal pseudogene 451) Homo sapiens
Analyze
Symbol: RNA5SP451
Name: RNA, 5S ribosomal pseudogene 451
RGD ID: 6481630
HGNC Page HGNC:43351
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S451
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381821,928,985 - 21,929,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1821,928,985 - 21,929,094 (-)EnsemblGRCh38hg38GRCh38
GRCh371819,508,946 - 19,509,055 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q11.2NCBI
HuRef1816,356,510 - 16,356,619 (-)NCBIHuRef
CHM1_11819,435,973 - 19,436,082 (-)NCBICHM1_1
T2T-CHM13v2.01822,114,024 - 22,114,133 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:222
Interacting mature miRNAs:238
Transcripts:ENST00000410588
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 2 1 11 1 2 1 2 1 3 4 2
Below cutoff 2 3 1 3 2 1 5 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410588
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1821,928,985 - 21,929,094 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP451 COSMIC
Ensembl Genes ENSG00000222520 Ensembl, ENTREZGENE
GTEx ENSG00000222520 GTEx
HGNC ID HGNC:43351 ENTREZGENE
Human Proteome Map RNA5SP451 Human Proteome Map
NCBI Gene RN5S451 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP451  RNA, 5S ribosomal pseudogene 451  RN5S451  RNA, 5S ribosomal 451  Symbol and/or name change 5135510 APPROVED