RNA5SP425 (RNA, 5S ribosomal pseudogene 425) - Rat Genome Database

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Gene: RNA5SP425 (RNA, 5S ribosomal pseudogene 425) Homo sapiens
Analyze
Symbol: RNA5SP425
Name: RNA, 5S ribosomal pseudogene 425
RGD ID: 6481610
HGNC Page HGNC:43325
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S425
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381647,505,432 - 47,505,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1647,505,432 - 47,505,543 (+)EnsemblGRCh38hg38GRCh38
GRCh371647,539,343 - 47,539,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q12.1NCBI
HuRef1633,429,903 - 33,430,014 (+)NCBIHuRef
CHM1_11648,946,339 - 48,946,450 (+)NCBICHM1_1
T2T-CHM13v2.01653,302,242 - 53,302,353 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:88
Interacting mature miRNAs:88
Transcripts:ENST00000410336
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1
Low 115 68 172 58 264 59 115 41 178 100 178 218 3 26 48 1
Below cutoff 195 178 199 67 170 37 216 152 524 48 180 187 30 91 108 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1647,505,432 - 47,505,543 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP425 COSMIC
Ensembl Genes ENSG00000222268 Ensembl, ENTREZGENE
GTEx ENSG00000222268 GTEx
HGNC ID HGNC:43325 ENTREZGENE
Human Proteome Map RNA5SP425 Human Proteome Map
NCBI Gene RN5S425 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP425  RNA, 5S ribosomal pseudogene 425  RN5S425  RNA, 5S ribosomal 425  Symbol and/or name change 5135510 APPROVED