ARAP1-AS1 (ARAP1 antisense RNA 1) - Rat Genome Database

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Pathways
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Gene: ARAP1-AS1 (ARAP1 antisense RNA 1) Homo sapiens
Analyze
Symbol: ARAP1-AS1
Name: ARAP1 antisense RNA 1
RGD ID: 6481281
HGNC Page HGNC:39993
Description: INTERACTS WITH dimethylselenide; hydroxyl; ozone
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1172,685,075 - 72,693,808 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map11q13.4NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30404578   PMID:31079598   PMID:31173500   PMID:32110804   PMID:33965958   PMID:34516333   PMID:35556220   PMID:36730555   PMID:37599524  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:220
Interacting mature miRNAs:228
Transcripts:ENST00000542022
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium 2 2 1 2 1
Low 59 8 84 75 161 78 36 37 41 33 79 55 3 2
Below cutoff 54 1 64 47 98 48 50 20 53 79 73 136 2 1

Sequence

Nucleotide Sequences
GenBank Nucleotide AP003065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000542022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1172,685,075 - 72,693,808 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ARAP1-AS1 COSMIC
Ensembl Genes ENSG00000256007 Ensembl
GTEx ENSG00000256007 GTEx
HGNC ID HGNC:39993 ENTREZGENE
Human Proteome Map ARAP1-AS1 Human Proteome Map
NCBI Gene ARAP1-AS1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 ARAP1-AS1  ARAP1 antisense RNA 1  ARAP1-AS1  ARAP1 antisense RNA 1 (non-protein coding)  Symbol and/or name change 5135510 APPROVED