HIGD1AP18 (HIG1 hypoxia inducible domain family member 1A pseudogene 18) - Rat Genome Database

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Gene: HIGD1AP18 (HIG1 hypoxia inducible domain family member 1A pseudogene 18) Homo sapiens
Analyze
Symbol: HIGD1AP18
Name: HIG1 hypoxia inducible domain family member 1A pseudogene 18
RGD ID: 6480922
HGNC Page HGNC:43013
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HIGD1A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38877,013,556 - 77,014,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl877,013,751 - 77,014,028 (-)EnsemblGRCh38hg38GRCh38
GRCh37877,925,792 - 77,926,324 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q21.13NCBI
HuRef873,412,467 - 73,412,765 (-)NCBIHuRef
CHM1_1877,977,587 - 77,977,885 (-)NCBICHM1_1
T2T-CHM13v2.0877,442,997 - 77,443,529 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:60
Interacting mature miRNAs:60
Transcripts:ENST00000520730
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 237 237 249 47 328 28 664 110 568 43 425 239 20 68 536
Below cutoff 971 912 660 215 408 122 1611 737 1570 121 579 595 93 455 1034

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000520730
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl877,013,751 - 77,014,028 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HIGD1AP18 COSMIC
Ensembl Genes ENSG00000253952 Ensembl
GTEx ENSG00000253952 GTEx
HGNC ID HGNC:43013 ENTREZGENE
Human Proteome Map HIGD1AP18 Human Proteome Map
NCBI Gene HIGD1AP18 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HIGD1AP18  HIG1 hypoxia inducible domain family member 1A pseudogene 18    HIG1 hypoxia inducible domain family, member 1A pseudogene 18  Symbol and/or name change 5135510 APPROVED