TIMM9P2 (TIMM9 pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TIMM9P2 (TIMM9 pseudogene 2) Homo sapiens
Analyze
Symbol: TIMM9P2
Name: TIMM9 pseudogene 2
RGD ID: 6480155
HGNC Page HGNC:39929
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: TIMM9  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,216,654 - 39,216,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,216,624 - 39,217,506 (+)EnsemblGRCh38hg38GRCh38
GRCh372140,588,580 - 40,588,714 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map21q22.2NCBI
HuRef2126,058,890 - 26,059,024 (+)NCBIHuRef
CHM1_12140,149,959 - 40,150,093 (+)NCBICHM1_1
T2T-CHM13v2.02137,601,254 - 37,601,388 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10830953  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:178
Interacting mature miRNAs:179
Transcripts:ENST00000419324
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 26 2 1
Low 236 169 298 102 355 83 788 131 356 92 320 354 24 149 399 1
Below cutoff 1185 1061 754 211 447 110 1792 832 1210 129 643 697 105 545 1089 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000419324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2139,216,624 - 39,217,506 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TIMM9P2 COSMIC
Ensembl Genes ENSG00000232608 Ensembl
GTEx ENSG00000232608 GTEx
HGNC ID HGNC:39929 ENTREZGENE
Human Proteome Map TIMM9P2 Human Proteome Map
NCBI Gene TIMM9P2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-23 TIMM9P2  TIMM9 pseudogene 2    translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 2  Symbol and/or name change 5135510 APPROVED