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Gene: Neurod2 (neuronal differentiation 2) Rattus rattus

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Symbol:

Neurod2

Name:

neuronal differentiation 2

RGD ID:

626056203

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN associative learning (ortholog); behavioral fear response (ortholog); cellular response to calcium ion (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 72 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

neurogenic differentiation factor 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Rrattus_CSIRO_v1 - Rrattus_CSIRO_v1 Assembly

Position:

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	56,063,489 - 56,067,817 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 72 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

associative learning (ISO)

behavioral fear response (ISO)

cellular response to calcium ion (ISO)

cellular response to electrical stimulus (ISO)

cerebellar cortex development (ISO)

negative regulation of synapse maturation (ISO)

neuron development (ISO)

positive regulation of calcium-mediated signaling (ISO)

positive regulation of neuron differentiation (ISO)

positive regulation of synapse maturation (ISO)

positive regulation of synaptic plasticity (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein ubiquitination (ISO)

Cellular Component

nucleus (ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

E-box binding (ISO)

protein heterodimerization activity (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Neurod2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	56,063,489 - 56,067,817 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

NEUROD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	39,603,768 - 39,607,920 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	39,603,536 - 39,609,777 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	17	37,760,021 - 37,764,173 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	35,013,547 - 35,017,701 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	35,014,574 - 35,017,699	NCBI
Celera	17	34,419,756 - 34,423,910 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	33,553,760 - 33,557,911 (-)	NCBI		HuRef
CHM1_1	17	37,995,843 - 37,999,997 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	40,467,334 - 40,471,484 (-)	NCBI		T2T-CHM13v2.0

Neurod2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	98,216,241 - 98,220,471 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	98,216,241 - 98,220,480 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	98,325,415 - 98,329,645 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	98,325,415 - 98,329,648 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	11	98,186,731 - 98,190,959 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	98,142,680 - 98,145,735 (-)	NCBI		MGSCv36	mm8
Celera	11	107,979,699 - 107,983,919 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.75	NCBI

Neurod2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	83,820,092 - 83,824,277 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	83,819,663 - 83,824,885 (-)	Ensembl				GRCr8
mRatBN7.2	10	83,323,801 - 83,327,986 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	83,324,442 - 83,327,986 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	88,268,712 - 88,272,256 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	87,766,799 - 87,770,343 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	83,159,451 - 83,162,995 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	86,908,867 - 86,912,411 (-)	NCBI
Lyon_Normotensive	10	87,641,306 - 87,644,850 (-)	NCBI
Lyon_Hypertensive	10	89,086,379 - 89,089,923 (-)	NCBI
F344_StmMcwi	10	89,198,226 - 89,201,770 (-)	NCBI
Rnor_6.0	10	86,280,865 - 86,282,681 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	86,280,892 - 86,282,693 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	10	86,077,165 - 86,091,687 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	87,097,850 - 87,111,300 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	82,073,679 - 82,075,495 (-)	NCBI		Celera
RGSC_v3.1	10	87,112,219 - 87,114,038 (-)	NCBI
Cytogenetic Map	10	q31	NCBI

Neurod2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	14,368,605 - 14,370,544 (-)	NCBI	ChiLan1.0	ChiLan1.0

NEUROD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,346,953 - 25,351,602 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	27,241,742 - 27,246,400 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	17,680,415 - 17,685,053 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	17,899,078 - 17,900,592 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

NEUROD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	22,864,708 - 22,869,044 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	22,866,212 - 22,867,360 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	22,336,643 - 22,340,973 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	23,657,923 - 23,662,258 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	23,659,425 - 23,660,573 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	22,430,480 - 22,434,810 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	22,691,526 - 22,695,854 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	22,816,657 - 22,820,987 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Neurod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	3	22,383,515 - 22,387,767 (+)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024405602	22,271,242 - 22,273,510 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	14,802,275 - 14,803,423 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	14,801,636 - 14,803,437 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NEUROD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	22,709,609 - 22,713,778 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	12	22,709,473 - 22,713,785 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	23,162,856 - 23,166,874 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NEUROD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	16	72,093,264 - 72,098,167 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666077	37,471,013 - 37,474,358 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	16	66,557,831 - 66,563,757 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	66,560,957 - 66,562,105 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Neurod2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	3,453,525 - 3,457,618 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624795	3,453,591 - 3,457,625 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	20	18,567,704 - 18,572,862 (-)	Ensembl

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_032913285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_032913286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAAIVD010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_032913285 ⟹ XP_032769176

Type:

CODING

Position:

Black Rat Assembly	Chr	Position (strand)	Source
Rrattus_CSIRO_v1	9	56,063,489 - 56,067,817 (+)	NCBI

RefSeq Acc Id:

XM_032913286 ⟹ XP_032769177

Type:

CODING

Position:

Black Rat Assembly	Chr	Position (strand)	Source
Rrattus_CSIRO_v1	9	56,064,494 - 56,067,814 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_032769176	(Get FASTA)	NCBI Sequence Viewer
	XP_032769177	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_032769176 ⟸ XM_032913285

RefSeq Acc Id:

XP_032769177 ⟸ XM_032913286

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Neurod2	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM