Csn2 (casein beta) - Rat Genome Database

Csn2 (casein beta) - Rat Genome Database

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Gene: Csn2 (casein beta) Mus musculus

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Symbol:

Csn2

Name:

casein beta

RGD ID:

62273

MGI Page

Description:

Predicted to enable cysteine-type endopeptidase inhibitor activity. Predicted to be involved in lactation. Located in extracellular region. Is expressed in mammary gland. Orthologous to human CSN2 (casein beta).

Type:

protein-coding

RefSeq Status:

Previously known as:

beta-casein; CS; Csnb

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSN2 (casein beta)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Csn2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Csn2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSN2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSN2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101959548 (beta-casein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSN2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CSN2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Csn2 (casein beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Csn2 (casein beta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CSN2 (casein beta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,840,478 - 87,847,288 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,840,483 - 87,847,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,692,619 - 87,699,429 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,692,624 - 87,699,630 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,121,649 - 88,128,446 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,767,185 - 88,773,982 (-)	NCBI		MGSCv36	mm8
MGSCv36	5	87,297,023 - 87,303,820 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	Experimental Mammary Neoplasms		ISO	Csn2 (Rattus norvegicus)	2306898	mRNA:increased expression:mammary gland (rat)	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	Animal Mammary Neoplasms		ISO	CSN2 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:9879772 and PMID:16316942
Csn2	Mouse	carcinoma		ISO	CSN2 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:9879772 and PMID:16316942
Csn2	Mouse	Experimental Mammary Neoplasms		ISO	CSN2 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:9879772 and PMID:16316942

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	(+)-pilocarpine	decreases expression	ISO	Csn2 (Rattus norvegicus)	6480464	Pilocarpine results in decreased expression of CSN2 mRNA	CTD	PMID:17971868
Csn2	Mouse	(+)-pilocarpine	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	Pilocarpine results in increased expression of CSN2 mRNA	CTD	PMID:17971868
Csn2	Mouse	(S)-nicotine	multiple interactions	EXP		6480464	Nicotine results in decreased expression of and results in decreased secretion of CSN2 protein	CTD	PMID:31783125
Csn2	Mouse	17beta-estradiol	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	Estradiol results in increased expression of CSN2 mRNA	CTD	PMID:26372666
Csn2	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of CSN2 protein	CTD	PMID:19490989
Csn2	Mouse	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	ARNT protein inhibits the reaction [Tetrachlorodibenzodioxin inhibits the reaction [PRL protein results in increased expression of CSN2 protein]] more ...	CTD	PMID:25265996
Csn2	Mouse	3-methylcholanthrene	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	Methylcholanthrene inhibits the reaction [8-prenylnaringenin results in increased expression of CSN2 mRNA]	CTD	PMID:26372666
Csn2	Mouse	4-vinylcyclohexene dioxide	decreases expression	ISO	Csn2 (Rattus norvegicus)	6480464	4-vinyl-1-cyclohexene dioxide results in decreased expression of CSN2 mRNA	CTD	PMID:21621605
Csn2	Mouse	7,12-dimethyltetraphene	decreases expression	ISO	Csn2 (Rattus norvegicus)	6480464	9 more ...	CTD	PMID:22248470
Csn2	Mouse	alpha-Zearalanol	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of CSN2 mRNA	CTD	PMID:35163327
Csn2	Mouse	ammonium chloride	affects expression	ISO	Csn2 (Rattus norvegicus)	6480464	Ammonium Chloride affects the expression of CSN2 mRNA	CTD	PMID:16483693
Csn2	Mouse	benzo[a]pyrene	affects methylation	ISO	CSN2 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of CSN2 exon	CTD	PMID:27901495
Csn2	Mouse	beta-naphthoflavone	decreases expression	EXP		6480464	beta-Naphthoflavone results in decreased expression of CSN2 mRNA and beta-Naphthoflavone results in decreased expression of CSN2 protein	CTD	PMID:29521512
Csn2	Mouse	beta-naphthoflavone	multiple interactions	EXP		6480464	AHR gene alternative form affects the reaction [beta-Naphthoflavone results in decreased expression of CSN2 mRNA] and beta-Naphthoflavone inhibits the reaction [[PRL protein co-treated with Dexamethasone] results in increased expression of CSN2 mRNA]	CTD	PMID:29521512
Csn2	Mouse	bisphenol A	decreases expression	ISO	Csn2 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of CSN2 mRNA and bisphenol A results in decreased expression of CSN2 protein	CTD	PMID:22349186 more ...
Csn2	Mouse	bisphenol A	decreases methylation	EXP		6480464	bisphenol A results in decreased methylation of CSN2 promoter	CTD	PMID:32946892
Csn2	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CSN2 mRNA and bisphenol A results in increased expression of CSN2 protein	CTD	PMID:32946892
Csn2	Mouse	bisphenol A	affects methylation	ISO	Csn2 (Rattus norvegicus)	6480464	bisphenol A affects the methylation of CSN2 enhancer	CTD	PMID:27697584
Csn2	Mouse	bisphenol A	decreases methylation	ISO	Csn2 (Rattus norvegicus)	6480464	bisphenol A results in decreased methylation of CSN2 promoter	CTD	PMID:27697584
Csn2	Mouse	bisphenol A	increases methylation	ISO	Csn2 (Rattus norvegicus)	6480464	bisphenol A results in increased methylation of CSN2 exon	CTD	PMID:27697584
Csn2	Mouse	cadmium atom	multiple interactions	EXP		6480464	Nifedipine promotes the reaction [Cadmium results in decreased expression of CSN2 mRNA]	CTD	PMID:21167921
Csn2	Mouse	cadmium atom	decreases expression	EXP		6480464	Cadmium results in decreased expression of CSN2 mRNA	CTD	PMID:21167921
Csn2	Mouse	cadmium dichloride	increases methylation	ISO	Csn2 (Rattus norvegicus)	6480464	Cadmium Chloride results in increased methylation of CSN2 promoter	CTD	PMID:22457795
Csn2	Mouse	dexamethasone	multiple interactions	EXP		6480464	[PRL protein co-treated with Dexamethasone] results in increased expression of CSN2 mRNA and beta-Naphthoflavone inhibits the reaction [[PRL protein co-treated with Dexamethasone] results in increased expression of CSN2 mRNA]	CTD	PMID:29521512
Csn2	Mouse	diethylstilbestrol	decreases expression	ISO	Csn2 (Rattus norvegicus)	6480464	Diethylstilbestrol results in decreased expression of CSN2 mRNA and Diethylstilbestrol results in decreased expression of CSN2 protein	CTD	PMID:22349186
Csn2	Mouse	diethylstilbestrol	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	Diethylstilbestrol results in increased expression of CSN2 mRNA and Diethylstilbestrol results in increased expression of CSN2 protein	CTD	PMID:21658437
Csn2	Mouse	furan	decreases methylation	ISO	Csn2 (Rattus norvegicus)	6480464	furan results in decreased methylation of CSN2 gene	CTD	PMID:22079235
Csn2	Mouse	genistein	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	[Genistein co-treated with Methoxychlor] results in increased expression of CSN2 protein more ...	CTD	PMID:16443925 and PMID:23160963
Csn2	Mouse	herbimycin	multiple interactions	EXP		6480464	herbimycin inhibits the reaction [[INS1 protein co-treated with PRL protein] results in increased expression of CSN2 mRNA]	CTD	PMID:7648427
Csn2	Mouse	linalool	increases expression	ISO	CSN2 (Homo sapiens)	6480464	linalool results in increased expression of CSN2 mRNA	CTD	PMID:19922762
Csn2	Mouse	methoxychlor	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	[Genistein co-treated with Methoxychlor] results in increased expression of CSN2 protein	CTD	PMID:16443925
Csn2	Mouse	methoxychlor	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	Methoxychlor results in increased expression of CSN2 protein	CTD	PMID:16443925
Csn2	Mouse	nicotine	multiple interactions	EXP		6480464	Nicotine results in decreased expression of and results in decreased secretion of CSN2 protein	CTD	PMID:31783125
Csn2	Mouse	nifedipine	decreases expression	EXP		6480464	Nifedipine results in decreased expression of CSN2 mRNA	CTD	PMID:21167921
Csn2	Mouse	nifedipine	multiple interactions	EXP		6480464	Nifedipine promotes the reaction [Cadmium results in decreased expression of CSN2 mRNA]	CTD	PMID:21167921
Csn2	Mouse	oxybenzone	increases expression	EXP		6480464	oxybenzone results in increased expression of CSN2 mRNA and oxybenzone results in increased expression of CSN2 protein	CTD	PMID:32946892
Csn2	Mouse	oxybenzone	decreases methylation	EXP		6480464	oxybenzone results in decreased methylation of CSN2 promoter	CTD	PMID:32946892
Csn2	Mouse	perfluorooctanoic acid	affects expression	EXP		6480464	perfluorooctanoic acid affects the expression of CSN2 mRNA	CTD	PMID:17132714
Csn2	Mouse	perfluorooctanoic acid	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	perfluorooctanoic acid results in increased expression of CSN2 mRNA	CTD	PMID:35163327
Csn2	Mouse	perfluorooctanoic acid	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of CSN2 mRNA	CTD	PMID:35163327
Csn2	Mouse	PhIP	decreases expression	ISO	Csn2 (Rattus norvegicus)	6480464	2-amino-1-methyl-6-phenylimidazo(4 and 5-b)pyridine results in decreased expression of CSN2 mRNA	CTD	PMID:15215175
Csn2	Mouse	PhIP	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	[2-amino-1-methyl-6-phenylimidazo(4 and 5-b)pyridine co-treated with Dietary Fats] affects the expression of CSN2 mRNA	CTD	PMID:9879772
Csn2	Mouse	PhIP	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	2-amino-1-methyl-6-phenylimidazo(4 and 5-b)pyridine results in increased expression of CSN2 mRNA	CTD	PMID:15215175
Csn2	Mouse	quercetin	multiple interactions	EXP		6480464	Quercetin inhibits the reaction [[INS1 protein co-treated with PRL protein] results in increased expression of CSN2 mRNA]	CTD	PMID:7648427
Csn2	Mouse	silver atom	increases expression	EXP		6480464	Silver results in increased expression of CSN2 mRNA	CTD	PMID:27131904
Csn2	Mouse	silver(0)	increases expression	EXP		6480464	Silver results in increased expression of CSN2 mRNA	CTD	PMID:27131904
Csn2	Mouse	sophoraflavanone B	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	8-prenylnaringenin results in increased expression of CSN2 mRNA	CTD	PMID:26372666
Csn2	Mouse	sophoraflavanone B	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	Methylcholanthrene inhibits the reaction [8-prenylnaringenin results in increased expression of CSN2 mRNA]	CTD	PMID:26372666
Csn2	Mouse	staurosporine	multiple interactions	EXP		6480464	Staurosporine inhibits the reaction [[INS1 protein co-treated with PRL protein] results in increased expression of CSN2 mRNA]	CTD	PMID:7648427
Csn2	Mouse	trichloroethene	decreases methylation	ISO	Csn2 (Rattus norvegicus)	6480464	Trichloroethylene results in decreased methylation of CSN2 gene	CTD	PMID:27618143
Csn2	Mouse	vinclozolin	multiple interactions	ISO	Csn2 (Rattus norvegicus)	6480464	[Genistein co-treated with vinclozolin] results in decreased expression of CSN2 mRNA and Genistein promotes the reaction [vinclozolin results in increased expression of CSN2 mRNA]	CTD	PMID:23160963
Csn2	Mouse	vinclozolin	increases expression	ISO	Csn2 (Rattus norvegicus)	6480464	vinclozolin results in increased expression of CSN2 mRNA	CTD	PMID:23160963
Csn2	Mouse	zinc atom	affects expression	ISO	Csn2 (Rattus norvegicus)	6480464	Zinc affects the expression of CSN2 mRNA	CTD	PMID:16488129
Csn2	Mouse	zinc(0)	affects expression	ISO	Csn2 (Rattus norvegicus)	6480464	Zinc affects the expression of CSN2 mRNA	CTD	PMID:16488129

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	lactation	involved_in	ISO	UniProtKB:P05814	2290270		GO_Central	GO_REF:0000119

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	extracellular region	located_in	IDA		2290270	PMID:16106354 and PMID:16698927	MGI	PMID:16106354 and PMID:16698927
Csn2	Mouse	extracellular space	is_active_in	IBA	PANTHER:PTN000161175 more ...	2290270		GO_Central	GO_REF:0000033
Csn2	Mouse	extracellular space	located_in	ISO	UniProtKB:P05814	2290270		GO_Central	GO_REF:0000119

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	cysteine-type endopeptidase inhibitor activity	enables	ISO	UniProtKB:P05814	2290270		GO_Central	GO_REF:0000119
Csn2	Mouse	protein binding	enables	ISO	UniProtKB:Q14192	9068941	PMID:25416956 and PMID:31515488	IntAct	PMID:25416956 and PMID:31515488
Csn2	Mouse	protein binding	enables	ISO	UniProtKB:Q14192 and UniProtKB:Q9UHD9	9068941	PMID:32296183	IntAct	PMID:32296183

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Csn2	Mouse	abnormal milk composition		IAGP		5509061		MGI	PMID:8016126
Csn2	Mouse	maternal effect		IAGP		5509061		MGI	PMID:8016126

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins.	Rijnkels M, etal., Genomics 2003 Oct;82(4):417-32.
9.	Global gene expression profiling of chemically induced rat mammary gland carcinomas and adenomas.	Shan L, etal., Toxicol Pathol. 2005;33(7):768-75.

PMID:1556095	PMID:1557422	PMID:2046676	PMID:2187188	PMID:2673924	PMID:2834201	PMID:3200849	PMID:3774558	PMID:6896059	PMID:6896688	PMID:7487953	PMID:7550308
PMID:7730398	PMID:7796533	PMID:8016126	PMID:8043948	PMID:8486351	PMID:8621534	PMID:8672136	PMID:8703124	PMID:8752004	PMID:8787747	PMID:9021141	PMID:9101712
PMID:9150435	PMID:9215907	PMID:10349636	PMID:10684249	PMID:11042159	PMID:11076861	PMID:11078793	PMID:11130978	PMID:11283268	PMID:11746508	PMID:12427545	PMID:12477932
PMID:12496367	PMID:12815069	PMID:12821156	PMID:12907752	PMID:14976147	PMID:15489334	PMID:16106354	PMID:16141072	PMID:16141073	PMID:16698927	PMID:16965262	PMID:16973758
PMID:17187062	PMID:17199044	PMID:18335503	PMID:18977342	PMID:19266165	PMID:19542223	PMID:20182891	PMID:20382704	PMID:20949099	PMID:21267068	PMID:21527503	PMID:21873635
PMID:22142338	PMID:22588720	PMID:22808460	PMID:23313770	PMID:24749073	PMID:27130254	PMID:27836773	PMID:33911083	PMID:33911869

Csn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,840,478 - 87,847,288 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,840,483 - 87,847,489 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,692,619 - 87,699,429 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,692,624 - 87,699,630 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,121,649 - 88,128,446 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,767,185 - 88,773,982 (-)	NCBI		MGSCv36	mm8
MGSCv36	5	87,297,023 - 87,303,820 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

CSN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	69,955,256 - 69,965,728 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	69,955,256 - 69,965,728 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	70,820,974 - 70,831,446 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	70,855,564 - 70,861,315 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	71,001,734 - 71,007,486	NCBI
Celera	4	68,174,402 - 68,180,154 (-)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	66,618,709 - 66,624,461 (-)	NCBI		HuRef
CHM1_1	4	70,857,351 - 70,863,103 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	73,290,050 - 73,300,523 (-)	NCBI		T2T-CHM13v2.0

Csn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	20,601,824 - 20,609,061 (+)	NCBI		GRCr8
mRatBN7.2	14	20,322,581 - 20,329,818 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	20,322,581 - 20,329,817 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	20,252,631 - 20,259,869 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	21,571,515 - 21,578,753 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	20,308,760 - 20,316,001 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	21,972,274 - 21,979,511 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	21,972,274 - 21,979,510 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	21,887,084 - 21,894,550 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	21,847,981 - 21,855,216 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	21,847,980 - 21,855,213 (+)	NCBI
Celera	14	19,725,645 - 19,732,882 (+)	NCBI		Celera
Cytogenetic Map	14	p21	NCBI

Csn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955447	2,868,899 - 2,889,969 (+)	NCBI	ChiLan1.0	ChiLan1.0

CSN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	60,124,394 - 60,134,813 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	60,327,438 - 60,337,859 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	54,276,495 - 54,282,221 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	60,613,091 - 60,618,815 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	60,613,091 - 60,618,815 (+)	Ensembl	panpan1.1		panPan2

CSN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	59,436,726 - 59,444,398 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	59,438,601 - 59,444,398 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,165,262 - 59,172,933 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,232,447 - 60,300,688 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	60,232,445 - 60,240,119 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	59,846,853 - 59,854,524 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	59,307,115 - 59,314,836 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	60,452,610 - 60,460,347 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101959548
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	16,229,074 - 16,237,085 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936598	4,683,300 - 4,687,605 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	66,915,923 - 66,922,636 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	66,914,231 - 66,922,636 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	148,228,429 - 148,236,984 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	18,439,757 - 18,448,210 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	18,441,387 - 18,445,142 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	4,486,917 - 4,494,573 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csn2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624890	1,320,558 - 1,326,782 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

.

Variants in Csn2
304 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	103
Count of miRNA genes:	90
Interacting mature miRNAs:	93
Transcripts:	ENSMUST00000082370
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140990	Lgq6_m	late growth QTL 6 (mouse)			Not determined			32133234	100777931	Mouse
1301010	ahl2_m	age related hearing loss 2 (mouse)			Not determined		5	62650568	96650688	Mouse
1301399	Cpfd3_m	cerebellum pattern fissures (mouse)			Not determined		5	87386871	121387065	Mouse
12910784	Pwgrq15_m	post-weaning growth rate QTL 15 (mouse)					5	77175823	97658215	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
10045972	Tir5_m	trypanosome infection response 5 (mouse)			Not determined		5	63705442	104387065	Mouse
1301126	Bwem1_m	body weight day 30 males 1 (mouse)			Not determined		5	87386871	121387065	Mouse
4141219	W10q16_m	weight 10 weeks QTL 16 (mouse)			Not determined			32133234	100777931	Mouse
10043962	Obq27_m	obesity QTL 27 (mouse)			Not determined		5	56285655	90285655	Mouse
12910816	Ogrq2_m	overall growth rate QTL 2 (mouse)					5	77175823	97658215	Mouse
1301691	Cdcs10_m	cytokine deficiency colitis susceptibility 10 (mouse)			Not determined		5	76280786	110280917	Mouse
11041665	Lmr24_m	leishmaniasis resistance 24 (mouse)					5	52694462	107321041	Mouse
12738408	Lfibq5_m	liver fibrosis QTL 5 (mouse)					5	84783853	89966041	Mouse
1301693	Sle6_m	systemic lupus erythematosus susceptibility 6 (mouse)			Not determined		5	8890693	87841837	Mouse
10043958	Chldq12_m	cholesterol and HDL QTL 12 (mouse)			Not determined		5	87386871	121387065	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
11252124	Modvl6_m	modifier of vacuolated lens 6 (mouse)					5	62650568	96650688	Mouse
1301419	Cypr3_m	cytokine production 3 (mouse)			Not determined		5	81019649	115019803	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
1301843	Listr1_m	listeriosis resistance 1 (mouse)			Not determined		5	60246081	94246203	Mouse
10043993	Hbnr10_m	Heligmosomoides bakeri nematode resistance 10 (mouse)			Not determined		5	72418876	106419011	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
10401246	Bglu13_m	blood glucose level 13 (mouse)			Not determined		5	79539640	113539786	Mouse
4141438	Skmw13_m	skeletal muscle weight 13 (mouse)			Not determined		5	76190263	110190479	Mouse
1301713	Dbsty2_m	diabesity 2 (mouse)			Not determined		5	76445064	110445225	Mouse
11041899	Lmr24a_m	leishmaniasis resistance 24a (mouse)					5	52694462	107321041	Mouse
10401245	Bglu18_m	blood glucose level 18 (mouse)			Not determined		5	82838468	116838597	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
1300931	Cocrb6_m	cocaine related behavior 6 (mouse)			Not determined		5	76445064	110445225	Mouse
4142317	Rgcs1_m	retinal ganglion cell susceptible 1 (mouse)			Not determined			55388334	108762627	Mouse
1300801	Drb2_m	dopamine receptor binding 2 (mouse)			Not determined		5	87386871	121387065	Mouse
1301829	Thyls2_m	thymic lymphoma susceptibility 2 (mouse)			Not determined		5	76445064	110445225	Mouse
12904740	M1fscn2_m	modifier 1 of Fscn2 (mouse)					5	66529661	100529661	Mouse
10755524	Mono1_m	monocyte differential 1 (mouse)					5	80849259	114849259	Mouse
4142428	Modvl1_m	modifier of vacuolated lens 1 (mouse)			Not determined			62650568	96650688	Mouse
1357431	Cia27_m	collagen induced arthritis 27 (mouse)			Not determined		5	75315348	120018629	Mouse
11040589	Lmr3a_m	leishmaniasis resistance 3a (mouse)					5	59602801	93602980	Mouse
11040590	Lmr3b_m	leishmaniasis resistance 3b (mouse)					5	59602801	93602980	Mouse
11040591	Lmr3c_m	leishmaniasis resistance 3c (mouse)					5	59602801	93602980	Mouse
12904739	M2fscn2_m	modifier 2 of FSCN2 (mouse)					5	66529661	100529661	Mouse
1301243	Bmd2_m	bone mineral density 2 (mouse)			Not determined		5	55388334	100455525	Mouse
1300986	Hdlq2_m	HDL QTL 2 (mouse)			Not determined		5	76280786	110280917	Mouse
11049560	Lmr24d_m	leishmaniasis resistance 24d (mouse)					5	64374877	98374996	Mouse
13464249	Ahl16_m	age related hearing loss, early onset 16 (mouse)					5	76445064	110445225	Mouse
13464248	Ahl13_m	age related hearing loss, early onset 13 (mouse)					5	55645874	89645995	Mouse
13464250	Ahl15_m	age related hearing loss, early onset 15 (mouse)					5	62650568	96650688	Mouse
11040592	Lmr3d_m	leishmaniasis resistance 3d (mouse)					5	59602801	93602980	Mouse
13464247	Ahl14_m	age related hearing loss, early onset 14 (mouse)					5	60403062	94403160	Mouse
4141124	Dshv2_m	dorsal hippocampal volume 2 (mouse)			Not determined		5	75315348	98019803	Mouse
10044005	Ahl7_m	age related hearing loss 7 (mouse)			Not determined		5	58330502	92330641	Mouse
13464241	Ahl18_m	age related hearing loss, early onset 18 (mouse)					5	87386871	121387065	Mouse
4141505	Chlq14_m	circulating hormone level QTL 14 (mouse)			Not determined		5	76280786	110280917	Mouse
13464242	Ahl17_m	age related hearing loss, early onset 17 (mouse)					5	82838468	116838597	Mouse

D5Mit16.1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,693,968 - 87,694,175	UniSTS	GRCm38
MGSCv37	5	88,122,993 - 88,123,200	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS
cM Map	5		UniSTS
Whitehead Genetic	5	32.8	UniSTS

D5Mit16.2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,693,666 - 87,693,863	UniSTS	GRCm38
MGSCv37	5	88,122,691 - 88,122,888	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS
cM Map	5		UniSTS
Whitehead Genetic	5	32.8	UniSTS
Whitehead_YAC	5		UniSTS

X04490

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,692,789 - 87,692,924	UniSTS	GRCm38
MGSCv37	5	88,121,814 - 88,121,949	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	44.91	UniSTS
Whitehead/MRC_RH	5	1126.02	UniSTS

Csn2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	5	88,121,681 - 88,121,829	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS
cM Map	5	44.91	UniSTS

PMC230309P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,694,477 - 87,695,001	UniSTS	GRCm38
MGSCv37	5	88,123,502 - 88,124,026	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	44.91	UniSTS

D5Mit12

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,693,862 - 87,693,978	UniSTS	GRCm38
MGSCv37	5	88,122,887 - 88,123,003	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS
Whitehead Genetic	5	32.8	UniSTS

D5Mit16

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,693,868 - 87,694,018	UniSTS	GRCm38
MGSCv37	5	88,122,893 - 88,123,043	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS
Whitehead Genetic	5	32.8	UniSTS

Csnb

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,692,799 - 87,692,921	UniSTS	GRCm38
MGSCv37	5	88,121,824 - 88,121,946	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS
cM Map	5	44.91	UniSTS

Csn2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,692,656 - 87,692,804	UniSTS	GRCm38
MGSCv37	5	88,121,681 - 88,121,829	UniSTS	GRCm37
Cytogenetic Map	5	E1	UniSTS
cM Map	5	45.0	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001286020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001286021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001286022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001286023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001286024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_389259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC074046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK021324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK021328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK085756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC003863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC003976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC013332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC020356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC020383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC021153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC050270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC057671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC080709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X04490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X13484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000082370 ⟹ ENSMUSP00000080976

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,487 - 87,847,284 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,628 - 87,699,425 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000196163 ⟹ ENSMUSP00000142673

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,841,695 - 87,845,951 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,693,836 - 87,698,092 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000196664

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,842,423 - 87,844,390 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,694,564 - 87,696,531 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000196869 ⟹ ENSMUSP00000142971

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,664 - 87,847,268 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,805 - 87,699,409 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000197281

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,484 - 87,847,268 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,625 - 87,699,409 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000197422 ⟹ ENSMUSP00000143341

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,483 - 87,847,489 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,624 - 87,699,630 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000197687

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,845,668 - 87,847,280 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,697,809 - 87,699,421 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000198057 ⟹ ENSMUSP00000143709

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,788 - 87,847,280 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,929 - 87,699,421 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000199624 ⟹ ENSMUSP00000143409

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,728 - 87,847,280 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,869 - 87,699,421 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000199716

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,845,752 - 87,847,280 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,697,893 - 87,699,421 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000200627

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,840,487 - 87,844,515 (-)	Ensembl
GRCm38.p6 Ensembl	5	87,692,628 - 87,696,656 (-)	Ensembl

RefSeq Acc Id:

NM_001286020 ⟹ NP_001272949

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,478 - 87,847,284 (-)	NCBI
GRCm38	5	87,692,619 - 87,699,425 (-)	NCBI

Sequence:

show sequence

GGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGACTTGACAGCCATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTACATTTACTGTATCC
TCTGAGACTGATAGTATTTCCAGTGAGGAATCTGTTGAACATATCAATGAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATCCA
GTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAAC
TGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCTTGCCAGTCTTGCTAATCTG
CACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCACAGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAAAGTTCTGTACTTTCTGCAGCAAGT
AGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTCTAAGAGGATTTCCAGGTTA
TTTTCTCCTCCTTATGTTTTTTGAACTGACTGAAACTGGAAATGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATGATATATTTCTGAATTAATCTACATGGAAGAAAAGAAAATGTATTCT
TTTATTTATTCTATGTATTATATGGCATTCATTTGAATTCGACCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAATTTTATAAGTGTTCAATATGGAGTTGAAAATGCAAGTCAATAATGTA
TACAAAATAGTTTGTGAAAAATTGGATTTTCTATTTTTTTTCTTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATAATCCTTTAGGCATATTTAAG

hide sequence

RefSeq Acc Id:

NM_001286021 ⟹ NP_001272950

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,478 - 87,847,284 (-)	NCBI
GRCm38	5	87,692,619 - 87,699,425 (-)	NCBI

Sequence:

show sequence

GGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGTAAGAACTTCAGATGACTTGACAGCCATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACT
ACATTTACTGTATCCTCTGAGACTGATAGTATTTCCAGTGAGGAATCTGTTGAACATATCAATGAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGT
TCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTG
TCATTTCTCCTGAACTGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCTTGCC
AGTCTTGCTAATCTGCACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCACAGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAAAGTTCTGTA
CTTTCTGCAGCAAGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTCTAAG
AGGATTTCCAGGTTATTTTCTCCTCCTTATGTTTTTTGAACTGACTGAAACTGGAAATGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATGATATATTTCTGAATTAATCTACATGGAAGAA
AAGAAAATGTATTCTTTTATTTATTCTATGTATTATATGGCATTCATTTGAATTCGACCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAATTTTATAAGTGTTCAATATGGAGTTGAAAATG
CAAGTCAATAATGTATACAAAATAGTTTGTGAAAAATTGGATTTTCTATTTTTTTTCTTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATAATCCTTTAGGCATATTTAAG

hide sequence

RefSeq Acc Id:

NM_001286022 ⟹ NP_001272951

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,478 - 87,847,284 (-)	NCBI
GRCm38	5	87,692,619 - 87,699,425 (-)	NCBI

Sequence:

show sequence

GGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGACTTGACAGCCATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTGATAGTATTTCCAGT
GAGGAATCTGTTGAACATATCAATGAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATA
TGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAACTGGAATCCTTCCTTAAAGCTAAAG
CCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCTTGCCAGTCTTGCTAATCTGCACCTTCCTCAGTCTCTGGTCCAG
CTCCTGGCACAGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAAAGTTCTGTACTTTCTGCAGCAAGTAGCACCCTTCCTTCCACAAGATAT
GTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTCTAAGAGGATTTCCAGGTTATTTTCTCCTCCTTATGTTTTTTGA
ACTGACTGAAACTGGAAATGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATGATATATTTCTGAATTAATCTACATGGAAGAAAAGAAAATGTATTCTTTTATTTATTCTATGTATTATATG
GCATTCATTTGAATTCGACCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAATTTTATAAGTGTTCAATATGGAGTTGAAAATGCAAGTCAATAATGTATACAAAATAGTTTGTGAAAAATTG
GATTTTCTATTTTTTTTCTTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATAATCCTTTAGGCATATTTAAG

hide sequence

RefSeq Acc Id:

NM_001286023 ⟹ NP_001272952

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,478 - 87,847,284 (-)	NCBI
GRCm38	5	87,692,619 - 87,699,425 (-)	NCBI

Sequence:

show sequence

GGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGACTTGACAGCCATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGGAATCTGTTGAACATATC
AATGAGCAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCAT
CTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAACTGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGC
ACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCTTGCCAGTCTTGCTAATCTGCACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCACAGGTTGTT
CAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAAAGTTCTGTACTTTCTGCAGCAAGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCT
GCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTCTAAGAGGATTTCCAGGTTATTTTCTCCTCCTTATGTTTTTTGAACTGACTGAAACTGGAAA
TGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATGATATATTTCTGAATTAATCTACATGGAAGAAAAGAAAATGTATTCTTTTATTTATTCTATGTATTATATGGCATTCATTTGAATTCGA
CCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAATTTTATAAGTGTTCAATATGGAGTTGAAAATGCAAGTCAATAATGTATACAAAATAGTTTGTGAAAAATTGGATTTTCTATTTTTTTTC
TTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATAATCCTTTAGGCATATTTAAG

hide sequence

RefSeq Acc Id:

NM_001286024 ⟹ NP_001272953

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,478 - 87,847,284 (-)	NCBI
GRCm38	5	87,692,619 - 87,699,425 (-)	NCBI

Sequence:

show sequence

GGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGACTTGACAGCCATGAA
GGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGGAATCTGTTGAACATATCAATGAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTA
AAGTTCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGG
CCTGTCATTTCTCCTGAACTGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCT
TGCCAGTCTTGCTAATCTGCACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCACAGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAAAGTTC
TGTACTTTCTGCAGCAAGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTC
TAAGAGGATTTCCAGGTTATTTTCTCCTCCTTATGTTTTTTGAACTGACTGAAACTGGAAATGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATGATATATTTCTGAATTAATCTACATGGA
AGAAAAGAAAATGTATTCTTTTATTTATTCTATGTATTATATGGCATTCATTTGAATTCGACCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAATTTTATAAGTGTTCAATATGGAGTTGAA
AATGCAAGTCAATAATGTATACAAAATAGTTTGTGAAAAATTGGATTTTCTATTTTTTTTCTTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATAATCCTTTAGGCATATTTAAG

hide sequence

RefSeq Acc Id:

NM_009972 ⟹ NP_034102

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,478 - 87,847,284 (-)	NCBI
GRCm38	5	87,692,619 - 87,699,425 (-)	NCBI
MGSCv37	5	88,121,649 - 88,128,446 (-)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

GGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGACTTGACAGCCATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTACATTTACTGTATCC
TCTGAGACTGATAGTATTTCCAGTGAGGAATCTGTTGAACATATCAATGAGCAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCAT
CCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTG
AACTGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCTTGCCAGTCTTGCTAAT
CTGCACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCACAGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAAAGTTCTGTACTTTCTGCAGCA
AGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTCTAAGAGGATTTCCAGG
TTATTTTCTCCTCCTTATGTTTTTTGAACTGACTGAAACTGGAAATGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATGATATATTTCTGAATTAATCTACATGGAAGAAAAGAAAATGTAT
TCTTTTATTTATTCTATGTATTATATGGCATTCATTTGAATTCGACCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAATTTTATAAGTGTTCAATATGGAGTTGAAAATGCAAGTCAATAAT
GTATACAAAATAGTTTGTGAAAAATTGGATTTTCTATTTTTTTTCTTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATAATCCTTTAGGCATATTTAAG

hide sequence

RefSeq Acc Id:

XR_389259

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,840,484 - 87,847,288 (-)	NCBI
GRCm38	5	87,692,625 - 87,699,429 (-)	NCBI

Sequence:

show sequence

GATAGGACATCATCCTTTCAGCTTCACCTCCTCTCTTGTCCTCCACTAAAGGACTTGACAGCCATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTACATTTACTGT
ATCCTCTGAGACTGATAGTATTTCCAGTGAGGAATCTGTTGAACATATCAATGAGCAGAAACTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCA
GCATCCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCG
CCTCATAAACTCTCAAATCCCCAGCCTTGCCAGTCTTGCTAATCTGCACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCACAGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCC
AGCTGTCTCTTCCTCAGTCCAAAGTTCTGTACTTTCTGCAGCAAGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCACCGTCCAATTCCCT
GCCACTCCACAACATTCCGTTTCTGTCTAAGAGGATTTCCAGGTTATTTTCTCCTCCTTATGTTTTTTGAACTGACTGAAACTGGAAATGTACAAATCTTTTCACCTTTGGATCATGCTACAAAAATG
ATATATTTCTGAATTAATCTACATGGAAGAAAAGAAAATGTATTCTTTTATTTATTCTATGTATTATATGGCATTCATTTGAATTCGACCCATGGACTCTATATGCTTCTCAGTTATATTACAGGAAT
TTTATAAGTGTTCAATATGGAGTTGAAAATGCAAGTCAATAATGTATACAAAATAGTTTGTGAAAAATTGGATTTTCTATTTTTTTTCTTTGAGAACCTATTTCCTTTCCAGTCATTTCAATAAAATA
ATCCTTTAGGCATA

hide sequence


Protein RefSeqs	NP_001272949	(Get FASTA)	NCBI Sequence Viewer
	NP_001272950	(Get FASTA)	NCBI Sequence Viewer
	NP_001272951	(Get FASTA)	NCBI Sequence Viewer
	NP_001272952	(Get FASTA)	NCBI Sequence Viewer
	NP_001272953	(Get FASTA)	NCBI Sequence Viewer
	NP_034102	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH13332	(Get FASTA)	NCBI Sequence Viewer
	AAH19114	(Get FASTA)	NCBI Sequence Viewer
	AAH21153	(Get FASTA)	NCBI Sequence Viewer
	AAH80709	(Get FASTA)	NCBI Sequence Viewer
	BAB32374	(Get FASTA)	NCBI Sequence Viewer
	BAB32375	(Get FASTA)	NCBI Sequence Viewer
	BAC35152	(Get FASTA)	NCBI Sequence Viewer
	BAC35153	(Get FASTA)	NCBI Sequence Viewer
	BAC35161	(Get FASTA)	NCBI Sequence Viewer
	BAC39503	(Get FASTA)	NCBI Sequence Viewer
	BAC39508	(Get FASTA)	NCBI Sequence Viewer
	BAC39510	(Get FASTA)	NCBI Sequence Viewer
	BAC39522	(Get FASTA)	NCBI Sequence Viewer
	BAE25131	(Get FASTA)	NCBI Sequence Viewer
	BAE25133	(Get FASTA)	NCBI Sequence Viewer
	BAE25138	(Get FASTA)	NCBI Sequence Viewer
	BAE25141	(Get FASTA)	NCBI Sequence Viewer
	BAE37898	(Get FASTA)	NCBI Sequence Viewer
	BAE37904	(Get FASTA)	NCBI Sequence Viewer
	BAE37917	(Get FASTA)	NCBI Sequence Viewer
	BAE37918	(Get FASTA)	NCBI Sequence Viewer
	BAE37919	(Get FASTA)	NCBI Sequence Viewer
	BAE37920	(Get FASTA)	NCBI Sequence Viewer
	CAA28178	(Get FASTA)	NCBI Sequence Viewer
	CAA31840	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000080976
	ENSMUSP00000142673
	ENSMUSP00000142971
	ENSMUSP00000143341
	ENSMUSP00000143341.2
	ENSMUSP00000143409.2
	ENSMUSP00000143709
GenBank Protein	P10598	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_034102 ⟸ NM_009972
- Peptide Label:	isoform a precursor
- UniProtKB:	Q9D1U6 (UniProtKB/Swiss-Prot), Q922Y5 (UniProtKB/Swiss-Prot), Q91VI5 (UniProtKB/Swiss-Prot), Q8VCU8 (UniProtKB/Swiss-Prot), Q8VCT6 (UniProtKB/Swiss-Prot), Q543D9 (UniProtKB/Swiss-Prot), Q9D1U7 (UniProtKB/Swiss-Prot), P10598 (UniProtKB/Swiss-Prot), Q3TP33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVFILACLVALALARETTFTVSSETDSISSEESVEHINEQKLQKVNLMGQLQAEDVLQAKVHSSIQSQPQAFPYAQAQTISCNPVPQNIQPIAQPPVVPSLGPVISPELESFLKAKATILPKHKQMP LLNSETVLRLINSQIPSLASLANLHLPQSLVQLLAQVVQAFPQTHLVSSQTQLSLPQSKVLYFLQQVAPFLPQDMSVQDLLQYLELLNPTVQFPATPQHSVSV hide sequence

RefSeq Acc Id:	NP_001272953 ⟸ NM_001286024
- Peptide Label:	isoform e precursor
- UniProtKB:	A0A0G2JF04 (UniProtKB/TrEMBL), A0A0G2JE86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVFILACLVALALAREESVEHINEKLQKVNLMGQLQAEDVLQAKVHSSIQSQPQAFPYAQAQTISCNPVPQNIQPIAQPPVVPSLGPVISPELESFLKAKATILPKHKQMPLLNSETVLRLINSQIP SLASLANLHLPQSLVQLLAQVVQAFPQTHLVSSQTQLSLPQSKVLYFLQQVAPFLPQDMSVQDLLQYLELLNPTVQFPATPQHSVSV hide sequence

RefSeq Acc Id:	NP_001272952 ⟸ NM_001286023
- Peptide Label:	isoform d precursor
- UniProtKB:	A0A0G2JE86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVFILACLVALALAREESVEHINEQKLQKVNLMGQLQAEDVLQAKVHSSIQSQPQAFPYAQAQTISCNPVPQNIQPIAQPPVVPSLGPVISPELESFLKAKATILPKHKQMPLLNSETVLRLINSQI PSLASLANLHLPQSLVQLLAQVVQAFPQTHLVSSQTQLSLPQSKVLYFLQQVAPFLPQDMSVQDLLQYLELLNPTVQFPATPQHSVSV hide sequence

RefSeq Acc Id:	NP_001272951 ⟸ NM_001286022
- Peptide Label:	isoform c precursor
- UniProtKB:	A0A0G2JE86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVFILACLVALALARETDSISSEESVEHINEKLQKVNLMGQLQAEDVLQAKVHSSIQSQPQAFPYAQAQTISCNPVPQNIQPIAQPPVVPSLGPVISPELESFLKAKATILPKHKQMPLLNSETVLR LINSQIPSLASLANLHLPQSLVQLLAQVVQAFPQTHLVSSQTQLSLPQSKVLYFLQQVAPFLPQDMSVQDLLQYLELLNPTVQFPATPQHSVSV hide sequence

RefSeq Acc Id:	NP_001272949 ⟸ NM_001286020
- Peptide Label:	isoform b precursor
- UniProtKB:	Q8BGL0 (UniProtKB/TrEMBL), Q3TP33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVFILACLVALALARETTFTVSSETDSISSEESVEHINEKLQKVNLMGQLQAEDVLQAKVHSSIQSQPQAFPYAQAQTISCNPVPQNIQPIAQPPVVPSLGPVISPELESFLKAKATILPKHKQMPL LNSETVLRLINSQIPSLASLANLHLPQSLVQLLAQVVQAFPQTHLVSSQTQLSLPQSKVLYFLQQVAPFLPQDMSVQDLLQYLELLNPTVQFPATPQHSVSV hide sequence

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P10598-F1-model_v2	AlphaFold	P10598	1-231	view protein structure

RGD ID:

Promoter ID:

Type:

single initiation site

Name:

MM_CASB

Description:

beta-Casein, CSNB or CSN2 gene.

SO ACC ID:

SO:0000170

Source:

EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Notes:

homology_group=Homology group 163; Mammalian beta-casein

Experiment Methods:

Sequencing of a full-length cDNA; Primer extension with homologous sequence ladder

Regulation:

mammary glands; (induced by or strongly expressed in) PRL, (induced by or strongly expressed in) glucc, (repressed by or weakly expressed in) prog.

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	Un	1,250 - 1,310	EPD

RGD ID:

Promoter ID:

Type:

multiple initiation site

Name:

Csn2_1

Description:

Mus musculus casein beta , transcript variant 5, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	87,699,421 - 87,699,481	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000063157	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000082370	ENTREZGENE
	ENSMUST00000196163	ENTREZGENE
	ENSMUST00000196869	ENTREZGENE
	ENSMUST00000197422	ENTREZGENE
	ENSMUST00000197422.5	UniProtKB/Swiss-Prot
	ENSMUST00000198057	ENTREZGENE
	ENSMUST00000199624.5	UniProtKB/Swiss-Prot
InterPro	Casein	UniProtKB/Swiss-Prot
	Casein_beta	UniProtKB/Swiss-Prot
	Casein_CS	UniProtKB/Swiss-Prot
KEGG Report	mmu:12991	UniProtKB/Swiss-Prot
MGD	MGI:88541	ENTREZGENE
NCBI Gene	12991	ENTREZGENE
PANTHER	BETA-CASEIN	UniProtKB/Swiss-Prot
	PTHR11500	UniProtKB/Swiss-Prot
Pfam	Casein	UniProtKB/Swiss-Prot
PhenoGen	Csn2	PhenoGen
PIRSF	Beta-casein	UniProtKB/Swiss-Prot
PROSITE	CASEIN_ALPHA_BETA	UniProtKB/Swiss-Prot
UniProt	A0A0G2JE86	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2JF04	ENTREZGENE, UniProtKB/TrEMBL
	CASB_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3TP33	ENTREZGENE, UniProtKB/TrEMBL
	Q543D9	ENTREZGENE
	Q8BGL0	ENTREZGENE, UniProtKB/TrEMBL
	Q8VCT6	ENTREZGENE
	Q8VCU8	ENTREZGENE
	Q91VI5	ENTREZGENE
	Q922Y5	ENTREZGENE
	Q9D1U6	ENTREZGENE
	Q9D1U7	ENTREZGENE
UniProt Secondary	Q543D9	UniProtKB/Swiss-Prot
	Q8VCT6	UniProtKB/Swiss-Prot
	Q8VCU8	UniProtKB/Swiss-Prot
	Q91VI5	UniProtKB/Swiss-Prot
	Q922Y5	UniProtKB/Swiss-Prot
	Q9D1U6	UniProtKB/Swiss-Prot
	Q9D1U7	UniProtKB/Swiss-Prot