Ilf3 (interleukin enhancer binding factor 3) - Rat Genome Database

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Gene: Ilf3 (interleukin enhancer binding factor 3) Rattus norvegicus
Analyze
Symbol: Ilf3
Name: interleukin enhancer binding factor 3
RGD ID: 619734
Description: Enables enzyme binding activity. Predicted to be involved in negative regulation of viral genome replication and regulation of gene expression. Predicted to be located in mitochondrion; nucleolus; and nucleoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human ILF3 (interleukin enhancer binding factor 3); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: interleukin enhancer-binding factor 3; M phase phosphoprotein 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,198,454 - 28,236,634 (+)NCBIGRCr8
mRatBN7.2819,922,409 - 19,960,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,922,460 - 19,960,350 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,964,289 - 23,991,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,262,127 - 22,289,719 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,162,536 - 20,189,833 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,402,877 - 22,440,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,402,890 - 22,440,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,467,473 - 22,494,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,481,746 - 20,508,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,481,745 - 20,508,850 (+)NCBI
Celera821,324,176 - 21,351,393 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
piroxicam  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tanespimycin  (ISO)
tert-butyl hydroperoxide  (ISO)
thapsigargin  (EXP)
thimerosal  (ISO)
thiram  (ISO)
torcetrapib  (ISO)
Tributyltin oxide  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO,ISS)
mitochondrion  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO,ISS)
ribonucleoprotein complex  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Protein-arginine methyltransferase I, the predominant protein-arginine methyltransferase in cells, interacts with and is regulated by interleukin enhancer-binding factor 3. Tang J, etal., J Biol Chem 2000 Jun 30;275(26):19866-76.
Additional References at PubMed
PMID:7519613   PMID:8885239   PMID:10574923   PMID:11739746   PMID:11777942   PMID:14731398   PMID:15057822   PMID:17289661   PMID:19946888   PMID:21123651   PMID:22658674   PMID:22681889  
PMID:22871113   PMID:24625528   PMID:27068509   PMID:31536826   PMID:32196615   PMID:33450132   PMID:36222883  


Genomics

Comparative Map Data
Ilf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,198,454 - 28,236,634 (+)NCBIGRCr8
mRatBN7.2819,922,409 - 19,960,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,922,460 - 19,960,350 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,964,289 - 23,991,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,262,127 - 22,289,719 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,162,536 - 20,189,833 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,402,877 - 22,440,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,402,890 - 22,440,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,467,473 - 22,494,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,481,746 - 20,508,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,481,745 - 20,508,850 (+)NCBI
Celera821,324,176 - 21,351,393 (+)NCBICelera
Cytogenetic Map8q13NCBI
ILF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,654,346 - 10,692,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,654,304 - 10,692,400 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,765,022 - 10,803,076 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,625,988 - 10,664,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341910,625,987 - 10,657,443NCBI
Celera1910,659,687 - 10,697,851 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,342,365 - 10,380,213 (+)NCBIHuRef
CHM1_11910,766,190 - 10,804,342 (+)NCBICHM1_1
T2T-CHM13v2.01910,780,831 - 10,818,864 (+)NCBIT2T-CHM13v2.0
Ilf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,278,964 - 21,316,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,279,167 - 21,316,657 (+)EnsemblGRCm39 Ensembl
GRCm38921,367,731 - 21,405,363 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,367,871 - 21,405,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,172,447 - 21,209,805 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,118,985 - 21,155,723 (+)NCBIMGSCv36mm8
Celera918,636,679 - 18,674,037 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.78NCBI
Ilf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,827,860 - 1,844,369 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,814,012 - 1,844,605 (+)NCBIChiLan1.0ChiLan1.0
ILF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,572,450 - 15,611,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,571,774 - 14,607,397 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,206,636 - 10,244,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,867,143 - 10,905,965 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,867,143 - 10,905,953 (+)Ensemblpanpan1.1panPan2
ILF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,511,915 - 50,544,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,515,334 - 50,544,184 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,384,533 - 50,416,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,034,719 - 51,067,176 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,037,994 - 51,067,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,242,969 - 50,275,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,670,295 - 50,702,494 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,911,363 - 50,943,802 (-)NCBIUU_Cfam_GSD_1.0
Ilf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,414,682 - 209,451,022 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659918,074 - 940,121 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659903,690 - 940,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ILF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,413,982 - 69,443,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,413,875 - 69,443,216 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,799,231 - 69,826,499 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ILF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,654,632 - 9,692,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,672,453 - 9,686,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,277,704 - 10,318,529 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ilf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248282,683,868 - 2,715,702 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ilf3
149 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:248
Count of miRNA genes:168
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000009354
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat

Markers in Region
MARC_21355-21356:1023203034:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,950,500 - 19,951,206 (+)MAPPERmRatBN7.2
Rnor_6.0822,430,994 - 22,431,699NCBIRnor6.0
Rnor_5.0822,485,107 - 22,485,812UniSTSRnor5.0
RGSC_v3.4820,499,184 - 20,499,889UniSTSRGSC3.4
RGSC_v3.4X28,479,654 - 28,479,807UniSTSRGSC3.4
Celera821,341,734 - 21,342,439UniSTS
Cytogenetic Map8q13UniSTS
UniSTS:479168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2819,958,406 - 19,960,038 (+)MAPPERmRatBN7.2
Rnor_6.0822,438,900 - 22,440,529NCBIRnor6.0
Rnor_5.0822,493,012 - 22,494,641UniSTSRnor5.0
RGSC_v3.4820,507,091 - 20,508,720UniSTSRGSC3.4
Celera821,349,640 - 21,351,263UniSTS
Cytogenetic Map8q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 41 25 19 25 2 5 74 35 41 11 2
Low 7 16 16 16 6 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF220102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000009354   ⟹   ENSRNOP00000009354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,943,016 - 19,956,910 (+)Ensembl
Rnor_6.0 Ensembl822,423,890 - 22,440,410 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079230   ⟹   ENSRNOP00000072369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,922,460 - 19,960,350 (+)Ensembl
Rnor_6.0 Ensembl822,402,890 - 22,440,885 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085320   ⟹   ENSRNOP00000073179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,943,786 - 19,960,350 (+)Ensembl
Rnor_6.0 Ensembl822,423,467 - 22,440,659 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101953   ⟹   ENSRNOP00000086301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl819,922,482 - 19,956,910 (+)Ensembl
RefSeq Acc Id: NM_053412   ⟹   NP_445864
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,209,010 - 28,236,309 (+)NCBI
mRatBN7.2819,932,867 - 19,960,168 (+)NCBI
Rnor_6.0822,413,319 - 22,440,659 (+)NCBI
Rnor_5.0822,467,473 - 22,494,771 (+)NCBI
RGSC_v3.4820,481,746 - 20,508,850 (+)RGD
Celera821,324,176 - 21,351,393 (+)RGD
Sequence:
RefSeq Acc Id: XM_008765990   ⟹   XP_008764212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,526 - 28,236,634 (+)NCBI
mRatBN7.2819,922,412 - 19,960,495 (+)NCBI
Rnor_6.0822,402,877 - 22,440,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765991   ⟹   XP_008764213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,526 - 28,236,634 (+)NCBI
mRatBN7.2819,922,410 - 19,960,495 (+)NCBI
Rnor_6.0822,402,877 - 22,440,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765992   ⟹   XP_008764214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,542 - 28,236,634 (+)NCBI
mRatBN7.2819,922,492 - 19,960,126 (+)NCBI
Rnor_6.0822,402,877 - 22,440,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765993   ⟹   XP_008764215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,542 - 28,236,634 (+)NCBI
mRatBN7.2819,922,412 - 19,959,919 (+)NCBI
Rnor_6.0822,402,877 - 22,440,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765994   ⟹   XP_008764216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,523 - 28,236,634 (+)NCBI
mRatBN7.2819,922,413 - 19,959,919 (+)NCBI
Rnor_6.0822,402,878 - 22,440,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765995   ⟹   XP_008764217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,526 - 28,233,055 (+)NCBI
mRatBN7.2819,922,409 - 19,956,918 (+)NCBI
Rnor_6.0822,402,877 - 22,437,407 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008765996   ⟹   XP_008764218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,542 - 28,233,055 (+)NCBI
mRatBN7.2819,922,425 - 19,956,910 (+)NCBI
Rnor_6.0822,402,878 - 22,437,407 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595942   ⟹   XP_017451431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,578 - 28,236,634 (+)NCBI
mRatBN7.2819,922,411 - 19,959,919 (+)NCBI
Rnor_6.0822,402,877 - 22,440,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082210   ⟹   XP_038938138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,199,199 - 28,236,634 (+)NCBI
mRatBN7.2819,932,180 - 19,959,919 (+)NCBI
RefSeq Acc Id: XM_039082212   ⟹   XP_038938140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,578 - 28,236,634 (+)NCBI
mRatBN7.2819,922,412 - 19,959,919 (+)NCBI
RefSeq Acc Id: XM_039082213   ⟹   XP_038938141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,526 - 28,236,634 (+)NCBI
mRatBN7.2819,922,410 - 19,960,495 (+)NCBI
RefSeq Acc Id: XM_039082216   ⟹   XP_038938144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,226,074 - 28,236,634 (+)NCBI
mRatBN7.2819,949,931 - 19,960,495 (+)NCBI
RefSeq Acc Id: XM_063266238   ⟹   XP_063122308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,578 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266239   ⟹   XP_063122309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,542 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266240   ⟹   XP_063122310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,209,003 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266241   ⟹   XP_063122311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,199,059 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266242   ⟹   XP_063122312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,578 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266244   ⟹   XP_063122314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,523 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266245   ⟹   XP_063122315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,454 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266246   ⟹   XP_063122316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,220,091 - 28,236,634 (+)NCBI
RefSeq Acc Id: XM_063266247   ⟹   XP_063122317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,542 - 28,233,055 (+)NCBI
RefSeq Acc Id: XM_063266248   ⟹   XP_063122318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,610 - 28,233,055 (+)NCBI
RefSeq Acc Id: XM_063266249   ⟹   XP_063122319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,523 - 28,233,055 (+)NCBI
RefSeq Acc Id: XM_063266250   ⟹   XP_063122320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,578 - 28,233,055 (+)NCBI
RefSeq Acc Id: XM_063266252   ⟹   XP_063122322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,198,523 - 28,233,055 (+)NCBI
Protein Sequences
Protein RefSeqs NP_445864 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764212 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764213 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764214 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764215 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764216 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764217 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764218 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451431 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938138 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938140 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938141 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938144 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122308 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122309 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122310 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122311 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122312 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122314 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122315 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122316 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122317 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122318 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122319 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122320 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122322 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF31446 (Get FASTA)   NCBI Sequence Viewer  
  EDL78299 (Get FASTA)   NCBI Sequence Viewer  
  EDL78300 (Get FASTA)   NCBI Sequence Viewer  
  EDL78301 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009354
  ENSRNOP00000009354.7
  ENSRNOP00000072369
  ENSRNOP00000072369.2
  ENSRNOP00000073179
  ENSRNOP00000073179.2
  ENSRNOP00000086301.1
GenBank Protein Q9JIL3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445864   ⟸   NM_053412
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A6JNR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764213   ⟸   XM_008765991
- Peptide Label: isoform X2
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764212   ⟸   XM_008765990
- Peptide Label: isoform X1
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764214   ⟸   XM_008765992
- Peptide Label: isoform X3
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A6JNR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764215   ⟸   XM_008765993
- Peptide Label: isoform X5
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A0A0G2K2T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764216   ⟸   XM_008765994
- Peptide Label: isoform X6
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A0A0G2K4U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764217   ⟸   XM_008765995
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008764218   ⟸   XM_008765996
- Peptide Label: isoform X12
- UniProtKB: F1LRU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451431   ⟸   XM_017595942
- Peptide Label: isoform X1
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072369   ⟸   ENSRNOT00000079230
RefSeq Acc Id: ENSRNOP00000073179   ⟸   ENSRNOT00000085320
RefSeq Acc Id: ENSRNOP00000009354   ⟸   ENSRNOT00000009354
RefSeq Acc Id: XP_038938141   ⟸   XM_039082213
- Peptide Label: isoform X8
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038938140   ⟸   XM_039082212
- Peptide Label: isoform X6
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A0A0G2K4U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938138   ⟸   XM_039082210
- Peptide Label: isoform X1
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038938144   ⟸   XM_039082216
- Peptide Label: isoform X16
RefSeq Acc Id: ENSRNOP00000086301   ⟸   ENSRNOT00000101953
RefSeq Acc Id: XP_063122315   ⟸   XM_063266245
- Peptide Label: isoform X9
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122314   ⟸   XM_063266244
- Peptide Label: isoform X7
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122319   ⟸   XM_063266249
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A0Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122322   ⟸   XM_063266252
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063122309   ⟸   XM_063266239
- Peptide Label: isoform X4
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063122317   ⟸   XM_063266247
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063122312   ⟸   XM_063266242
- Peptide Label: isoform X6
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A0A0G2K4U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122308   ⟸   XM_063266238
- Peptide Label: isoform X3
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A6JNR5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122320   ⟸   XM_063266250
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A0Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122318   ⟸   XM_063266248
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063122311   ⟸   XM_063266241
- Peptide Label: isoform X6
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A0A0G2K4U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122310   ⟸   XM_063266240
- Peptide Label: isoform X5
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot),   A0A0G2K2T6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122316   ⟸   XM_063266246
- Peptide Label: isoform X11
- UniProtKB: Q9JIL3 (UniProtKB/Swiss-Prot)
Protein Domains
DRBM   DZF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIL3-F1-model_v2 AlphaFold Q9JIL3 1-897 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695787
Promoter ID:EPDNEW_R6304
Type:initiation region
Name:Ilf3_1
Description:interleukin enhancer binding factor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0822,402,946 - 22,403,006EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619734 AgrOrtholog
BioCyc Gene G2FUF-31421 BioCyc
Ensembl Genes ENSRNOG00000022741 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009354.7 UniProtKB/TrEMBL
  ENSRNOT00000079230.2 UniProtKB/TrEMBL
  ENSRNOT00000085320.2 UniProtKB/TrEMBL
  ENSRNOT00000101953.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro dsRBD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_dom_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILF3/NF90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84472 UniProtKB/Swiss-Prot
NCBI Gene 84472 ENTREZGENE
PANTHER PTHR45762:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam dsrm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ilf3 PhenoGen
PROSITE DS_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022741 RatGTEx
SMART DSRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DZF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K2T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K4U6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0Y6 ENTREZGENE, UniProtKB/TrEMBL
  A6JNR5 ENTREZGENE, UniProtKB/TrEMBL
  F1LRU1 ENTREZGENE, UniProtKB/TrEMBL
  ILF3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Ilf3  interleukin enhancer binding factor 3      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Ilf3  interleukin enhancer binding factor 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction COOH-terminal region rich in arginine, glycine, and serine is responsible for interaction with protein-arginine methyltransferase I 633174