ILF3 (interleukin enhancer binding factor 3) - Rat Genome Database

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Gene: ILF3 (interleukin enhancer binding factor 3) Chlorocebus sabaeus
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Symbol: ILF3
Name: interleukin enhancer binding factor 3
RGD ID: 18381580
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN defense response to virus (inferred); negative regulation of DNA-templated transcription (inferred); negative regulation of translation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin enhancer-binding factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,654,632 - 9,692,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,672,453 - 9,686,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,277,704 - 10,318,529 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ILF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,654,632 - 9,692,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,672,453 - 9,686,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,277,704 - 10,318,529 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ILF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,654,346 - 10,692,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,654,304 - 10,692,400 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,765,022 - 10,803,076 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,625,988 - 10,664,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341910,625,987 - 10,657,443NCBI
Celera1910,659,687 - 10,697,851 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,342,365 - 10,380,213 (+)NCBIHuRef
CHM1_11910,766,190 - 10,804,342 (+)NCBICHM1_1
T2T-CHM13v2.01910,780,831 - 10,818,864 (+)NCBIT2T-CHM13v2.0
Ilf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,278,964 - 21,316,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,279,167 - 21,316,657 (+)EnsemblGRCm39 Ensembl
GRCm38921,367,731 - 21,405,363 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,367,871 - 21,405,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,172,447 - 21,209,805 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,118,985 - 21,155,723 (+)NCBIMGSCv36mm8
Celera918,636,679 - 18,674,037 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.78NCBI
Ilf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,198,454 - 28,236,634 (+)NCBIGRCr8
mRatBN7.2819,922,409 - 19,960,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,922,460 - 19,960,350 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,964,289 - 23,991,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,262,127 - 22,289,719 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,162,536 - 20,189,833 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,402,877 - 22,440,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,402,890 - 22,440,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,467,473 - 22,494,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,481,746 - 20,508,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,481,745 - 20,508,850 (+)NCBI
Celera821,324,176 - 21,351,393 (+)NCBICelera
Cytogenetic Map8q13NCBI
Ilf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,827,860 - 1,844,369 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,814,012 - 1,844,605 (+)NCBIChiLan1.0ChiLan1.0
ILF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,572,450 - 15,611,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,571,774 - 14,607,397 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,206,636 - 10,244,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,867,143 - 10,905,965 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,867,143 - 10,905,953 (+)Ensemblpanpan1.1panPan2
ILF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,511,915 - 50,544,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,515,334 - 50,544,184 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,384,533 - 50,416,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,034,719 - 51,067,176 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,037,994 - 51,067,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,242,969 - 50,275,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,670,295 - 50,702,494 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,911,363 - 50,943,802 (-)NCBIUU_Cfam_GSD_1.0
Ilf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,414,682 - 209,451,022 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659918,074 - 940,121 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659903,690 - 940,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ILF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,413,982 - 69,443,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,413,875 - 69,443,216 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,799,231 - 69,826,499 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ilf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248282,683,868 - 2,715,702 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000005030   ⟹   ENSCSAP00000003264
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl69,672,453 - 9,686,793 (+)Ensembl
RefSeq Acc Id: XM_007995243   ⟹   XP_007993434
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.169,654,649 - 9,691,838 (+)NCBI
Vero_WHO_p1.0NW_02366607410,277,704 - 10,318,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007995244   ⟹   XP_007993435
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.169,654,632 - 9,692,202 (+)NCBI
Vero_WHO_p1.0NW_02366607410,280,228 - 10,318,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007995245   ⟹   XP_007993436
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.169,654,648 - 9,691,838 (+)NCBI
Vero_WHO_p1.0NW_02366607410,277,704 - 10,318,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007995246   ⟹   XP_007993437
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.169,654,632 - 9,688,095 (+)NCBI
Vero_WHO_p1.0NW_02366607410,284,330 - 10,318,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007995247   ⟹   XP_007993438
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.169,654,632 - 9,688,095 (+)NCBI
Vero_WHO_p1.0NW_02366607410,284,335 - 10,318,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037992458   ⟹   XP_037848386
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607410,277,704 - 10,316,640 (-)NCBI
RefSeq Acc Id: XP_007993435   ⟸   XM_007995244
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007993437   ⟸   XM_007995246
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R3S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007993438   ⟸   XM_007995247
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007993436   ⟸   XM_007995245
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007993434   ⟸   XM_007995243
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000003264   ⟸   ENSCSAT00000005030
RefSeq Acc Id: XP_037848386   ⟸   XM_037992458
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005030.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
InterPro dsRBD_dom UniProtKB/TrEMBL
  DZF_dom UniProtKB/TrEMBL
  DZF_dom_C UniProtKB/TrEMBL
  DZF_dom_N UniProtKB/TrEMBL
  ILF3/NF90 UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
NCBI Gene ILF3 ENTREZGENE
PANTHER PTHR45762:SF4 UniProtKB/TrEMBL
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
Pfam dsrm UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
  DZF_C UniProtKB/TrEMBL
PROSITE DS_RBD UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
SMART DSRM UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
UniProt A0A0D9R3S5 ENTREZGENE, UniProtKB/TrEMBL