SNRPEP4 (SNRPE pseudogene 4) - Rat Genome Database

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Gene: SNRPEP4 (SNRPE pseudogene 4) Homo sapiens
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Symbol: SNRPEP4
Name: SNRPE pseudogene 4
RGD ID: 5553007
HGNC Page HGNC:43446
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: small nuclear ribonucleoprotein polypeptide E pseudogene 4
Related Functional Gene: SNRPE  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,576,486 - 5,576,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,576,660 - 5,576,938 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,576,497 - 5,576,962 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,527,517 - 5,527,962 (-)NCBINCBI36Build 36hg18NCBI36
Celera195,513,844 - 5,514,313 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,337,613 - 5,338,082 (-)NCBIHuRef
CHM1_1195,576,066 - 5,576,535 (-)NCBICHM1_1
T2T-CHM13v2.0195,563,169 - 5,563,634 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SNRPEP4Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of SNRPEP4 mRNACTDPMID:33212167



.

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENST00000435815
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human

D1S3358  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37195,576,546 - 5,576,661UniSTSGRCh37
GRCh371203,839,070 - 203,839,185UniSTSGRCh37
Build 361202,105,693 - 202,105,808RGDNCBI36
Celera1176,974,417 - 176,974,532RGD
Celera195,513,897 - 5,514,012UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map19p13.3UniSTS
HuRef195,337,666 - 5,337,781UniSTS
HuRef1175,005,166 - 175,005,281UniSTS
Whitehead-YAC Contig Map1 UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1203 2414 2777 2208 4866 1679 2296 4 579 1830 422 2264 7046 6294 51 3635 827 1710 1605 168



Ensembl Acc Id: ENST00000435815
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl195,576,660 - 5,576,938 (-)Ensembl
RefSeq Acc Id: XM_001726381
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36195,527,517 - 5,527,962 (-)NCBI Archive
GenBank Protein EAW69166 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
COSMIC SNRPEP4 COSMIC
Ensembl Genes ENSG00000233270 Ensembl
GTEx ENSG00000233270 GTEx
HGNC ID HGNC:43446 ENTREZGENE
Human Proteome Map SNRPEP4 Human Proteome Map
NCBI Gene 100130109 ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-25 SNRPEP4  SNRPE pseudogene 4  SNRPEP4  small nuclear ribonucleoprotein polypeptide E pseudogene 4  Symbol and/or name change 5135510 APPROVED