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Gene: Gm16023 (predicted gene 16023) Mus musculus

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Symbol:

Gm16023

Name:

predicted gene 16023

RGD ID:

5145364

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,692,754 - 155,709,212 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,692,757 - 155,709,240 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,608,297 - 155,624,755 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,608,300 - 155,624,755 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	154,982,406 - 154,998,864 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	4	157,883,223 - 157,899,765 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	86.65	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gm16023	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gm16023	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gm16023	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Variants in Gm16023
1139 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	189
Count of miRNA genes:	172
Interacting mature miRNAs:	181
Transcripts:	ENSMUST00000137752, ENSMUST00000154931
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
4142077	Ignpq2_m	IgA nephropathy QTL 2 (mouse)			Not determined		4	133676733	156860686	Mouse
4142139	Adip12_m	adiposity 12 (mouse)			Not determined		4	124621281	156860686	Mouse
10043996	Gct5_m	granulosa cell tumorigenesis 5 (mouse)			Not determined		4	127784226	156860686	Mouse
1301108	Scon2_m	sucrose consumption 2 (mouse)			Not determined		4	134654451	156860686	Mouse
1300858	Tafat_m	tally ho associated mesenteric fat pad weight (mouse)			Not determined		4	124621281	156860686	Mouse
1300537	Ap3q_m	alcohol preference 3 QTL (mouse)			Not determined		4	134654451	156860686	Mouse
1301982	Pltiq1_m	phospholipid transfer protein inducibility QTL 1 (mouse)			Not determined		4	124621281	156860686	Mouse
10045620	Heal22_m	wound healing/regeneration 22 (mouse)			Not determined		4	125230872	156860686	Mouse
4142481	Gct1_m	granulosa cell tumorigenesis 1 (mouse)			Not determined		4	127784226	156860686	Mouse
10755531	Lymph3_m	lymphocyte differential 3 (mouse)					4	124553483	156860686	Mouse
11533916	Mts1_m	mammary tumor susceptibility 1 (mouse)					4	125289325	156860686	Mouse
1300933	Cdcs9_m	cytokine deficiency colitis susceptibility 9 (mouse)			Not determined		4	125230872	156860686	Mouse
1300874	Gasa2_m	gastritis type A susceptibility locus 2 (mouse)			Not determined		4	133010494	156860686	Mouse
1300621	Tpnr1_m	thermal pain response 1 (mouse)			Not determined		4	125230872	156860686	Mouse
1300780	Cocrb16_m	cocaine related behavior 16 (mouse)			Not determined		4	138943725	156860686	Mouse

AU016090

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	155,620,338 - 155,620,481	UniSTS	GRCm38
MGSCv37	4	154,994,447 - 154,994,590	UniSTS	GRCm37
Celera	4	157,895,302 - 157,895,445	UniSTS
Cytogenetic Map	4	E2	UniSTS
Whitehead/MRC_RH	4	2002.23	UniSTS

AI957035

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	155,622,977 - 155,623,122	UniSTS	GRCm38
MGSCv37	4	154,997,086 - 154,997,231	UniSTS	GRCm37
Celera	4	157,897,987 - 157,898,132	UniSTS
Cytogenetic Map	4	E2	UniSTS
cM Map	4	79.4	UniSTS
Whitehead/MRC_RH	4	2020.06	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_040441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI746382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL627405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000137752

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	155,692,757 - 155,709,212 (-)	Ensembl
GRCm38.p6 Ensembl	4	155,608,300 - 155,624,755 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000154931

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	155,700,478 - 155,708,937 (-)	Ensembl
GRCm38.p6 Ensembl	4	155,616,021 - 155,624,480 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000246500

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	155,708,636 - 155,709,240 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000283827

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	155,701,854 - 155,709,071 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000283828

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	155,706,535 - 155,709,223 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000283829

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	155,706,535 - 155,709,084 (-)	Ensembl

RefSeq Acc Id:

NR_040441

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	155,692,754 - 155,709,212 (-)	NCBI
GRCm38	4	155,608,297 - 155,624,755 (-)	ENTREZGENE
Celera	4	157,883,223 - 157,899,765 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

CCTTACATCGTGAGTTGGCTCCTGCCAACGACGCGAGGCTGGGCGGATAAAAGCGAAGTAGCGTCTGGTAACGTCCTGGGGTGTCTCCGAGAGATGACGTTTCGAGACGATGCGCTCGGCCGTCTGCG
GAAACCGGAAACCGTGCCTCCCGCTGCACCTTCGCTCTGCCAGGCAGGGCTACCTCCAGGCACTCGGTAGCGTAGTCTGCAGGCCGAGCAGCATTTGCACTCGTGACAAGCTGCTTGTGCCACTCAAC
CTTCCGCAGCCAGACATTTGTTTCTACCCATCAGACTAATTGCTCTGACGTATAGACGCCTCCAAAGTGGCGTCGTGCCATCCAATGGAAAAACAAGTTGTCTTTCTGACCTACCCAGGACCCAGGAA
GCTGAATTCACAGCATCTGCACAGCACCTGTGGAGGGAAGCATGAGGCCAAGCTGAGAACGAGTTTCCCACACACGAGCACTGAATATCACATTCATTCCACAAGCACATCTGGGGACAGGATGTATT
TGTTGAGGAACAGTGTACAGAAGCTGAAGAAGAACCACAGTGTGAGGTAGATGAGAGCCCTTGAACTCCACACACCCAGATCCGACTCAATGACAGTGGTCTCTGTGATGGTGACAGTGAGCAAGCTC
TCCTCTGGGCTGCCATCACCTTTGGTAAAGACAATCTTCTCACTTCGGTGACCAAATAGAGACCCCCAAGTGAGAAGTGTTTTTCCCTTGGGCTCTTCCTCGCAGCCAGGCGCTGCCTCCTCCGGCAC
TTGGGATTTCGCTGCTGCTGACATGCTGAGGGCGCTTTCGAGGAGGGAATCTCAAAGACGGCCCACATGGATCAAAGCAACTGCGCAGACAGAGAGACACAGCTGGAGGAAGAGGCAGCAGTCCTGGT
CTGCTTGAATGTTGACTCCAGCATGCTGGTCTCCAGCAAAGTAAGGAAGCAAAGGCTAAAATGGTAAGAAAAGAAACCACATTACTAATTTTGAACATTTTATATTTTTTTGTAACCTGTGTAAGATG
CATTTGACACCTGAATGTATCTAAGTGCAGACATATGTGGAGGCCAGAGAACAACCTGCCTTGTACCTTTGTTTGCCACTAAGTGAGCTAGTTGGTCCGCAAGCTTCCAAGGGTCCTCCTGCCTCTAT
TTTCTATCTTACCTTCCAAAGATTCTCCTGGTTTTTTGTTTTCAATATTGCCAAAGATGCACTGAGATAATTGCCAGGTCCTGGAGCCTACACTGAGCTCAGGAGGTACCAAACTGGGTCAACCCTCT
TCTTTTTCTTCTTCCCAGGCTGGTTCAGCCCACAGCGGGCCTTGCCCCCAATCTCTAATGACATTGTCTGCATCTTCTCAGCCCTTTCAGGAACCAGGAACCAACCATAGATAGAAGGAACTGAGTGT
TCCTCTCAAACTGCTATTTTTCATGCCTGGTTTCTCCATACCTTCCACAGAAACCCTCTGAACTTTATCCAAAGCCTCTACCTGTTCCTAACTGGAATGCTGATTCACCACATTGAATATTTAATTTA
AGAGAAGTTCTTCTTGATTCCATTTCAAACTGGCCTGTTCTCATTTTGTTCTTTCATTCCTCCTTCACATCCTTTATTGTCTCTGCTGGTTTATTATCCATAGATCATAGCGATTAGGTCCATTTTTT
CTTGGTGTACTACACAGGTGAATGTAGTAGAGAGCATCTCAGACTACATCCCTTCATCTCTTATCCTAGCCTGAGATTTGCCCAGGGCTCAGGACCAATTTTATGTTACTTTCTAGGCAAACACTACA
CTAATGACATCAACTTAAAGCTTGGCCCCAGGATGCTCAGGCCTGTGCTACAATGTCTGTAGGTGAGAAGTCTACCACTATAAGCCAAACCTGTTCTCCTGTAGATACTGGCATTTTCCTAGTACTGG
CTTTGAGCAGGGTCTCATCTTTGACCTGCTTCATCTAGTGAGGACCAAGGTCACCTCCTGTCCAAAGAACACATCATAGAGTGCTTGCCTACCATGCACAAACCCTGAGGTTTGCACTCTGTACTGAA
GCTAATACTGGCTTCTGGCTTCTACAGGGACCAGGCATATATGTGGCTCACATATACACATGAGACAAGTACCCACACACATAATAAATAAGACAAATTTTAAAAAGGGCACTGTAGTGACAATTCTG
GAATTTTGGTGTTTCTTTAAAAATACAGAACTATTCTATGGATATGGCTTTGTTTTAATCCTAGATGTGGGGTAAGGGGCTGCTTTGAACTGTCTGTAGCAGCTGACTATGCATCGCCTCATGCTCTA
GCAGAGACATGGTTTTGCCAACTGCAGATAGTTTCTGAGATTGTGTGATATTTGGAATTCTGGGAACCTTTCAGAAGGTAGATAAATGTTAGGACCATACTAGGCGGGGTTGGTGGTTAGTGGTTGTT
CAAGGGTGAAGTTTGTTAGTAGTCCTGCTCGAAGAAGAAATAAATTACATTTGGAGATTCA

hide sequence

RGD ID:

6885814

Promoter ID:

EPDNEW_M6347

Type:

initiation region

Name:

Gm16023_1

Description:

Mus musculus predicted gene 16023 , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	155,624,768 - 155,624,828	EPDNEW

RGD ID:

15092804

Promoter ID:

EPDNEWNC_M712

Type:

multiple initiation site

Name:

Gm16023_1

Description:

predicted gene 16023 [Source:MGI Symbol;Acc:MGI:3802146]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	155,624,768 - 155,624,828	EPDNEWNC

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000086682	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000137752	ENTREZGENE
MGD	MGI:3802146	ENTREZGENE
NCBI Gene	100502734	ENTREZGENE
PhenoGen	Gm16023	PhenoGen
RNAcentral	URS0000759AF5	RNACentral
	URS00009AEE0F	RNACentral
	URS0000EEBC66	RNACentral
	URS00025F1D01	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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