Gm10420 (predicted gene 10420) - Rat Genome Database

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Gene: Gm10420 (predicted gene 10420) Mus musculus
Analyze
Symbol: Gm10420
Name: predicted gene 10420
RGD ID: 5143884
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S2 pseudogene; 40S ribosomal protein S2-like; ENSMUSG00000072789
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,672,937 - 122,673,882 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,672,960 - 122,673,841 (+)EnsemblGRCm39 Ensembl
GRCm386122,695,978 - 122,696,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,696,001 - 122,696,882 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,646,019 - 122,646,900 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera6124,495,961 - 124,496,903 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm10420
46 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:81
Interacting mature miRNAs:82
Transcripts:ENSMUST00000121713
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
RH125489  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8D3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map5G1.3UniSTS
317A21-T7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map8D3UniSTS
cM Map17 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036152466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6122,672,960 - 122,673,841 (+)Ensembl
GRCm38.p6 Ensembl6122,696,001 - 122,696,882 (+)Ensembl
RefSeq Acc Id: XM_036152466   ⟹   XP_036008359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,672,937 - 122,673,882 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036008359 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_036008359   ⟸   XM_036152466
- UniProtKB: Q3TL20 (UniProtKB/TrEMBL),   Q3TLE5 (UniProtKB/TrEMBL),   Q3TXS9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000072789 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000121713 ENTREZGENE
MGD MGI:3704275 ENTREZGENE
NCBI Gene Gm10420 ENTREZGENE
PhenoGen Gm10420 PhenoGen
UniProt Q3TL20 ENTREZGENE
  Q3TLE5 ENTREZGENE
  Q3TXS9 ENTREZGENE