MTND5P28 (MT-ND5 pseudogene 28) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: MTND5P28 (MT-ND5 pseudogene 28) Homo sapiens
Analyze
Symbol: MTND5P28
Name: MT-ND5 pseudogene 28
RGD ID: 5133609
HGNC Page HGNC:42290
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 28
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,215,338 - 120,217,212 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,215,181 - 120,217,279 (+)EnsemblGRCh38hg38GRCh38
GRCh372120,972,914 - 120,974,788 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q14.2NCBI
HuRef2113,297,197 - 113,298,563 (+)NCBIHuRef
CHM1_12120,977,308 - 120,979,182 (+)NCBICHM1_1
T2T-CHM13v2.02120,650,098 - 120,651,972 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:124
Interacting mature miRNAs:124
Transcripts:ENST00000438005
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH12252  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372120,975,145 - 120,975,280UniSTSGRCh37
Build 362120,691,615 - 120,691,750RGDNCBI36
Celera2114,301,992 - 114,302,127RGD
Cytogenetic Map2q14.2UniSTS
HuRef2113,298,920 - 113,299,055UniSTS
GeneMap99-GB4 RH Map2437.47UniSTS
D2S2885  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372120,975,156 - 120,975,293UniSTSGRCh37
Build 362120,691,626 - 120,691,763RGDNCBI36
Celera2114,302,003 - 114,302,140RGD
Cytogenetic Map2q14.2UniSTS
HuRef2113,298,931 - 113,299,068UniSTS
TNG Radiation Hybrid Map269798.0UniSTS
Stanford-G3 RH Map24974.0UniSTS
NCBI RH Map2901.2UniSTS
GeneMap99-G3 RH Map25887.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 169 114 106 15 145 3 196 69 372 22 200 166 12 37 163
Below cutoff 2041 2322 1232 356 1146 214 3527 1787 2944 207 1073 1221 149 1017 2260 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000438005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2120,215,181 - 120,217,279 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTND5P28 COSMIC
Ensembl Genes ENSG00000223549 Ensembl, ENTREZGENE
GTEx ENSG00000223549 GTEx
HGNC ID HGNC:42290 ENTREZGENE
Human Proteome Map MTND5P28 Human Proteome Map
NCBI Gene 100505755 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 MTND5P28  MT-ND5 pseudogene 28    mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 28  Symbol and/or name change 5135510 APPROVED
2015-11-24 MTND5P28  mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 28    MT-ND5 pseudogene 28  Symbol and/or name change 5135510 APPROVED