PPP1R26P3 (protein phosphatase 1 regulatory subunit 26 pseudogene 3) - Rat Genome Database

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Gene: PPP1R26P3 (protein phosphatase 1 regulatory subunit 26 pseudogene 3) Homo sapiens
Analyze
Symbol: PPP1R26P3
Name: protein phosphatase 1 regulatory subunit 26 pseudogene 3
RGD ID: 5133159
HGNC Page HGNC:42017
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KIAA0649P3
Related Functional Gene: PPP1R26  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,401,898 - 18,404,263 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,400,407 - 18,404,206 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,672,200 - 20,674,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,000,709 - 19,004,956 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map22q11.21NCBI
HuRef223,965,498 - 3,967,131 (-)NCBIHuRef
CHM1_1225,641,431 - 5,643,404 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:170
Interacting mature miRNAs:173
Transcripts:ENST00000448709
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low
Below cutoff 117 148 108 23 59 18 275 136 333 6 113 94 5 69 198

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_022868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC011718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000612861
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2218,400,407 - 18,404,206 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PPP1R26P3 COSMIC
Ensembl Genes ENSG00000275060 Ensembl
GTEx ENSG00000275060 GTEx
HGNC ID HGNC:42017 ENTREZGENE
Human Proteome Map PPP1R26P3 Human Proteome Map
NCBI Gene 100132173 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 PPP1R26P3  protein phosphatase 1 regulatory subunit 26 pseudogene 3    protein phosphatase 1, regulatory subunit 26 pseudogene 3  Symbol and/or name change 5135510 APPROVED
2011-10-18 PPP1R26P3  protein phosphatase 1, regulatory subunit 26 pseudogene 3  KIAA0649P3  KIAA0649 pseudogene 3  Symbol and/or name change 5135510 APPROVED