C18orf63 (chromosome 18 open reading frame 63) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: C18orf63 (chromosome 18 open reading frame 63) Homo sapiens
Analyze
Symbol: C18orf63
Name: chromosome 18 open reading frame 63
RGD ID: 5132403
HGNC Page HGNC:40037
Description: ASSOCIATED WITH chromosome 18q deletion syndrome; Intestinal malrotation; intestinal volvulus; INTERACTS WITH 2-palmitoylglycerol; tebuconazole
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZP781G0119; hypothetical protein LOC644041; uncharacterized protein C18orf63
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381874,315,839 - 74,359,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1874,315,839 - 74,359,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371871,983,074 - 72,026,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361870,134,026 - 70,177,404 (+)NCBINCBI36Build 36hg18NCBI36
Celera1868,850,455 - 68,893,768 (+)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1868,715,345 - 68,758,653 (+)NCBIHuRef
CHM1_11871,978,309 - 72,021,621 (+)NCBICHM1_1
T2T-CHM13v2.01874,543,390 - 74,586,735 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C18orf63Humanchromosome 18q deletion syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:25741868
C18orf63Humanchromosome 18q deletion syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:31690835
C18orf63Humanintestinal volvulus  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIALClinVarPMID:25741868
C18orf63HumanNeurodevelopmental Disorders  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
C18orf63Humanpulmonary valve stenosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary valve stenosisClinVarPMID:25741868
C18orf63HumanVolvulus Of Midgut  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Volvulus of midgutClinVarPMID:25741868


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C18orf63Human2-palmitoylglycerol increases expressionEXP 64804642-palmitoylglycerol results in increased expression of C18ORF63 mRNACTDPMID:37199045
C18orf63Humantebuconazole increases expressionEXP 6480464tebuconazole results in increased expression of C18ORF63 mRNACTDPMID:30458266

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
C18orf63HumanIntestinal malrotation  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MalrotationClinVarPMID:25741868
C18orf63HumanPulmonic stenosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary valve stenosisClinVarPMID:25741868
PMID:29507755   PMID:35013218   PMID:36517590   PMID:37314216  



C18orf63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381874,315,839 - 74,359,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1874,315,839 - 74,359,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371871,983,074 - 72,026,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361870,134,026 - 70,177,404 (+)NCBINCBI36Build 36hg18NCBI36
Celera1868,850,455 - 68,893,768 (+)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1868,715,345 - 68,758,653 (+)NCBIHuRef
CHM1_11871,978,309 - 72,021,621 (+)NCBICHM1_1
T2T-CHM13v2.01874,543,390 - 74,586,735 (+)NCBIT2T-CHM13v2.0
Gm17266
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,813,104 - 84,856,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,816,683 - 84,854,841 (-)EnsemblGRCm39 Ensembl
GRCm381884,794,979 - 84,838,641 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,798,558 - 84,836,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371884,967,950 - 85,006,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1885,864,250 - 85,901,657 (-)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
C18h18orf63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81880,434,363 - 80,477,235 (-)NCBIGRCr8
mRatBN7.21878,159,334 - 78,202,317 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1878,164,661 - 78,202,326 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01881,644,346 - 81,683,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1881,644,858 - 81,682,206 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01880,644,848 - 80,728,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41881,366,583 - 81,403,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1876,778,682 - 76,818,318 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
CUNH18orf63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540257,753,018 - 57,805,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540257,753,626 - 57,805,255 (+)NCBIChiLan1.0ChiLan1.0
C17H18orf63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21791,851,001 - 91,893,887 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11877,543,624 - 77,586,510 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01867,700,930 - 67,741,493 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11870,981,685 - 71,022,136 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1870,981,368 - 71,024,698 (+)Ensemblpanpan1.1panPan2
C1H18orf63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115,028,255 - 5,062,610 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15,030,825 - 5,061,846 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha16,035,590 - 6,069,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014,838,717 - 4,873,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14,842,492 - 4,877,301 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114,877,566 - 4,909,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014,833,375 - 4,865,571 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015,002,355 - 5,036,727 (-)NCBIUU_Cfam_GSD_1.0
CUNH18orf63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,803,913 - 18,849,581 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366164,125,043 - 4,170,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H18orf63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,687,631 - 149,725,161 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,685,242 - 149,725,523 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21166,007,610 - 166,028,797 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH18orf63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,532,726 - 5,575,198 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,535,139 - 5,572,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606020,310,929 - 20,348,254 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH18orf63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248066,350,054 - 6,384,940 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in C18orf63
3 total Variants

1 to 10 of 182 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 18q21.1-23(chr18:50068129-80252149)x3 copy number gain See cases [RCV000050989] Chr18:50068129..80252149 [GRCh38]
Chr18:47594499..78010032 [GRCh37]
Chr18:45848497..76111023 [NCBI36]
Chr18:18q21.1-23
pathogenic
GRCh38/hg38 18q22.1-23(chr18:64950938-80252149)x1 copy number loss See cases [RCV000050985] Chr18:64950938..80252149 [GRCh38]
Chr18:62618174..78010032 [GRCh37]
Chr18:60769154..76111023 [NCBI36]
Chr18:18q22.1-23
pathogenic
GRCh38/hg38 18q21.31-23(chr18:56618038-80252149)x1 copy number loss See cases [RCV000051032] Chr18:56618038..80252149 [GRCh38]
Chr18:54285269..78010032 [GRCh37]
Chr18:52436267..76111023 [NCBI36]
Chr18:18q21.31-23
pathogenic
GRCh38/hg38 18p11.32-q23(chr18:148963-80252149)x3 copy number gain See cases [RCV000051048] Chr18:148963..80252149 [GRCh38]
Chr18:148963..78010032 [GRCh37]
Chr18:138963..76111023 [NCBI36]
Chr18:18p11.32-q23
pathogenic
GRCh38/hg38 18q11.1-23(chr18:20960320-80234429)x3 copy number gain See cases [RCV000052543] Chr18:20960320..80234429 [GRCh38]
Chr18:18540281..77992312 [GRCh37]
Chr18:16794279..76093303 [NCBI36]
Chr18:18q11.1-23
pathogenic
GRCh38/hg38 18p11.32-q23(chr18:53345-80209986)x3 copy number gain See cases [RCV000052501] Chr18:53345..80209986 [GRCh38]
Chr18:53345..77967869 [GRCh37]
Chr18:43345..76068860 [NCBI36]
Chr18:18p11.32-q23
pathogenic
GRCh38/hg38 18q11.1-23(chr18:20989762-80209986)x3 copy number gain See cases [RCV000052549] Chr18:20989762..80209986 [GRCh38]
Chr18:18569723..77967869 [GRCh37]
Chr18:16823721..76068860 [NCBI36]
Chr18:18q11.1-23
pathogenic
GRCh38/hg38 18p11.32-q23(chr18:148763-80252290)x3 copy number gain See cases [RCV000052507] Chr18:148763..80252290 [GRCh38]
Chr18:148763..78010173 [GRCh37]
Chr18:138763..76111164 [NCBI36]
Chr18:18p11.32-q23
pathogenic
GRCh38/hg38 18q21.33-23(chr18:63195579-80234429)x3 copy number gain See cases [RCV000052572] Chr18:63195579..80234429 [GRCh38]
Chr18:60862812..77992312 [GRCh37]
Chr18:59013792..76093303 [NCBI36]
Chr18:18q21.33-23
pathogenic
GRCh38/hg38 18q22.1-23(chr18:64747528-80252290)x3 copy number gain See cases [RCV000052573] Chr18:64747528..80252290 [GRCh38]
Chr18:62414764..78010173 [GRCh37]
Chr18:60565744..76111164 [NCBI36]
Chr18:18q22.1-23
pathogenic
1 to 10 of 182 rows

Predicted Target Of
Summary Value
Count of predictions:923
Count of miRNA genes:585
Interacting mature miRNAs:637
Transcripts:ENST00000579455
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549953MULTSCL1_HMultiple sclerosis susceptibility QTL 1 (human)3.42Multiple sclerosis susceptibility186405627080373285Human
597164406GWAS1260480_Hlipid measurement QTL GWAS1260480 (human)0.0000005lipid measurementblood lipid measurement (CMO:0000050)187432587674325877Human

SHGC-147382  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371871,982,406 - 71,982,693UniSTSGRCh37
Build 361870,133,386 - 70,133,673RGDNCBI36
Celera1868,849,751 - 68,850,038RGD
Cytogenetic Map18q22.3UniSTS
HuRef1868,714,641 - 68,714,928UniSTS
TNG Radiation Hybrid Map1829788.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
428 348 399 323 853 214 602 89 256 42 471 1057 1145 3 718 184 578 521 47



Ensembl Acc Id: ENST00000579455   ⟹   ENSP00000464330
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1874,315,839 - 74,359,189 (+)Ensembl
RefSeq Acc Id: NM_001174123   ⟹   NP_001167594
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381874,315,839 - 74,359,189 (+)NCBI
GRCh371871,983,110 - 72,026,422 (+)RGD
Celera1868,850,455 - 68,893,768 (+)RGD
HuRef1868,715,345 - 68,758,653 (+)RGD
CHM1_11871,978,309 - 72,021,621 (+)NCBI
T2T-CHM13v2.01874,543,390 - 74,586,735 (+)NCBI
Sequence:
Protein RefSeqs NP_001167594 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAH18203 (Get FASTA)   NCBI Sequence Viewer  
  CBH19268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000464330
  ENSP00000464330.2
GenBank Protein Q68DL7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001167594   ⟸   NM_001174123
- UniProtKB: A6NME8 (UniProtKB/Swiss-Prot),   Q68DL7 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000464330   ⟸   ENST00000579455

Name Modeler Protein Id AA Range Protein Structure
AF-Q68DL7-F1-model_v2 AlphaFold Q68DL7 1-685 view protein structure



1 to 17 of 17 rows
Database
Acc Id
Source(s)
COSMIC C18orf63 COSMIC
Ensembl Genes ENSG00000206043 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000579455 ENTREZGENE
  ENST00000579455.2 UniProtKB/Swiss-Prot
GTEx ENSG00000206043 GTEx
HGNC ID HGNC:40037 ENTREZGENE
Human Proteome Map C18orf63 Human Proteome Map
InterPro DUF4708 UniProtKB/Swiss-Prot
KEGG Report hsa:644041 UniProtKB/Swiss-Prot
NCBI Gene 644041 ENTREZGENE
PANTHER GENE, 17266-RELATED UniProtKB/Swiss-Prot
  PTHR28495 UniProtKB/Swiss-Prot
Pfam DUF4708 UniProtKB/Swiss-Prot
PharmGKB PA166049057 PharmGKB
UniProt A6NME8 ENTREZGENE
  CR063_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6NME8 UniProtKB/Swiss-Prot
1 to 17 of 17 rows