CUNH18orf63 (chromosome unknown C18orf63 homolog) - Rat Genome Database

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Gene: CUNH18orf63 (chromosome unknown C18orf63 homolog) Heterocephalus glaber
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Symbol: CUNH18orf63
Name: chromosome unknown C18orf63 homolog
RGD ID: 18907884
Description: ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C18orf63 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248066,350,054 - 6,384,940 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CUNH18orf63Naked Mole-Ratchromosome 18q deletion syndrome  ISOC18orf63 (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:25741868 and PMID:31690835
CUNH18orf63Naked Mole-Ratintestinal volvulus  ISOC18orf63 (Homo sapiens)8554872ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIALClinVarPMID:25741868
CUNH18orf63Naked Mole-RatNeurodevelopmental Disorders  ISOC18orf63 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
CUNH18orf63Naked Mole-Ratpulmonary valve stenosis  ISOC18orf63 (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary valve stenosisClinVarPMID:25741868
CUNH18orf63Naked Mole-RatVolvulus Of Midgut  ISOC18orf63 (Homo sapiens)8554872ClinVar Annotator: match by term: Volvulus of midgutClinVarPMID:25741868



CUNH18orf63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248066,350,054 - 6,384,940 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C18orf63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381874,315,839 - 74,359,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1874,315,839 - 74,359,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371871,983,074 - 72,026,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361870,134,026 - 70,177,404 (+)NCBINCBI36Build 36hg18NCBI36
Celera1868,850,455 - 68,893,768 (+)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1868,715,345 - 68,758,653 (+)NCBIHuRef
CHM1_11871,978,309 - 72,021,621 (+)NCBICHM1_1
T2T-CHM13v2.01874,543,390 - 74,586,735 (+)NCBIT2T-CHM13v2.0
Gm17266
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,813,104 - 84,856,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,816,683 - 84,854,841 (-)EnsemblGRCm39 Ensembl
GRCm381884,794,979 - 84,838,641 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,798,558 - 84,836,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371884,967,950 - 85,006,108 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1885,864,250 - 85,901,657 (-)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
C18h18orf63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81880,434,363 - 80,477,235 (-)NCBIGRCr8
mRatBN7.21878,159,334 - 78,202,317 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1878,164,661 - 78,202,326 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01881,644,346 - 81,683,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1881,644,858 - 81,682,206 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01880,644,848 - 80,728,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41881,366,583 - 81,403,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1876,778,682 - 76,818,318 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
CUNH18orf63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540257,753,018 - 57,805,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540257,753,626 - 57,805,255 (+)NCBIChiLan1.0ChiLan1.0
C17H18orf63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21791,851,001 - 91,893,887 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11877,543,624 - 77,586,510 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01867,700,930 - 67,741,493 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11870,981,685 - 71,022,136 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1870,981,368 - 71,024,698 (+)Ensemblpanpan1.1panPan2
C1H18orf63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115,028,255 - 5,062,610 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15,030,825 - 5,061,846 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha16,035,590 - 6,069,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014,838,717 - 4,873,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14,842,492 - 4,877,301 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114,877,566 - 4,909,187 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014,833,375 - 4,865,571 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015,002,355 - 5,036,727 (-)NCBIUU_Cfam_GSD_1.0
CUNH18orf63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,803,913 - 18,849,581 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366164,125,043 - 4,170,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H18orf63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,687,631 - 149,725,161 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,685,242 - 149,725,523 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21166,007,610 - 166,028,797 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH18orf63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,532,726 - 5,575,198 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,535,139 - 5,572,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606020,310,929 - 20,348,254 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






RefSeq Acc Id: XM_021242167   ⟹   XP_021097826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,350,054 - 6,384,940 (-)NCBI
RefSeq Acc Id: XM_021242168   ⟹   XP_021097827
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,350,054 - 6,384,869 (-)NCBI
RefSeq Acc Id: XM_021242169   ⟹   XP_021097828
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,350,054 - 6,384,921 (-)NCBI
RefSeq Acc Id: XM_021242172   ⟹   XP_021097831
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,350,174 - 6,384,940 (-)NCBI
Protein RefSeqs XP_021097826 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097827 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097828 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097831 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021097826   ⟸   XM_021242167
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RJA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097828   ⟸   XM_021242169
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RPY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097827   ⟸   XM_021242168
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RJA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097831   ⟸   XM_021242172
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RM23 (UniProtKB/TrEMBL)



1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000027052 ENTREZGENE
Ensembl Transcript ENSHGLT00000035632 ENTREZGENE
  ENSHGLT00000035633 ENTREZGENE
InterPro DUF4708 UniProtKB/TrEMBL
NCBI Gene CUNH18orf63 ENTREZGENE
PANTHER GENE, 17266-RELATED UniProtKB/TrEMBL
  HYPOTHETICAL PROTEIN LOC100359752 UniProtKB/TrEMBL
Pfam DUF4708 UniProtKB/TrEMBL
UniProt A0AAX6RJA0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RM23 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RPY2 ENTREZGENE, UniProtKB/TrEMBL
1 to 11 of 11 rows