RBMX2P3 (RBMX2 pseudogene 3) - Rat Genome Database

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Gene: RBMX2P3 (RBMX2 pseudogene 3) Homo sapiens
Analyze
Symbol: RBMX2P3
Name: RBMX2 pseudogene 3
RGD ID: 5131387
HGNC Page HGNC:39925
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RNA binding motif protein, X-linked 2 pseudogene 3
Related Functional Gene: RBMX2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,084,205 - 119,086,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,084,998 - 119,085,954 (-)EnsemblGRCh38hg38GRCh38
GRCh371119,626,828 - 119,628,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1117,858,461 - 117,859,414 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1117,486,650 - 117,487,603 (-)NCBIHuRef
CHM1_11119,742,902 - 119,743,855 (-)NCBICHM1_1
T2T-CHM13v2.01119,097,415 - 119,099,210 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:119
Interacting mature miRNAs:123
Transcripts:ENST00000450122
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 5 7 19 6 1 3 14 8 4 3
Below cutoff 541 777 610 180 353 133 1216 451 967 163 627 560 51 489 683 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000450122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1119,084,998 - 119,085,954 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RBMX2P3 COSMIC
Ensembl Genes ENSG00000223575 Ensembl
GTEx ENSG00000223575 GTEx
HGNC ID HGNC:39925 ENTREZGENE
Human Proteome Map RBMX2P3 Human Proteome Map
NCBI Gene 100421047 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 RBMX2P3  RBMX2 pseudogene 3    RNA binding motif protein, X-linked 2 pseudogene 3  Symbol and/or name change 5135510 APPROVED