KRT8P45 (keratin 8 pseudogene 45) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: KRT8P45 (keratin 8 pseudogene 45) Homo sapiens
Analyze
Symbol: KRT8P45
Name: keratin 8 pseudogene 45
RGD ID: 5130839
HGNC Page HGNC:39879
Description: INTERACTS WITH benzo[a]pyrene; okadaic acid; perfluorooctane-1-sulfonic acid
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: KRT8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,073,181 - 157,074,898 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,073,257 - 157,074,703 (+)EnsemblGRCh38hg38GRCh38
GRCh371157,042,973 - 157,044,690 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,306,920 - 155,311,382 (+)NCBINCBI36Build 36hg18NCBI36
Celera1130,114,156 - 130,115,876 (+)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1128,401,222 - 128,402,940 (+)NCBIHuRef
CHM1_11158,439,372 - 158,441,089 (+)NCBICHM1_1
T2T-CHM13v2.01156,209,997 - 156,211,715 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KRT8P45Humanbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of KRT8P45 mRNACTDPMID:32234424
KRT8P45Humanokadaic acid increases expressionEXP 6480464Okadaic Acid results in increased expression of KRT8P45 mRNACTDPMID:38832940
KRT8P45Humanperfluorooctane-1-sulfonic acid increases expressionEXP 6480464perfluorooctane sulfonic acid results in increased expression of KRT8P45 mRNACTDPMID:27153767



.

.
Variants in KRT8P45
1 total Variants

Predicted Target Of
Summary Value
Count of predictions:436
Count of miRNA genes:376
Interacting mature miRNAs:420
Transcripts:ENST00000414328
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357381BW57_HBody weight QTL 57 (human)10.0001Body weightfat free mass after exercise training1140630236166630236Human
596962446GWAS1081965_Hbrain measurement QTL GWAS1081965 (human)2e-09brain measurement1157074859157074860Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
900 2314 1656 1787 3590 1610 2201 3 553 898 397 1677 5005 4592 24 2484 738 1599 1540 169 1



Ensembl Acc Id: ENST00000414328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1157,073,257 - 157,074,703 (+)Ensembl
RefSeq Acc Id: XR_017100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361155,306,920 - 155,311,382 (+)NCBI Archive


Database
Acc Id
Source(s)
COSMIC KRT8P45 COSMIC
Ensembl Genes ENSG00000224520 Ensembl, ENTREZGENE
GTEx ENSG00000224520 GTEx
HGNC ID HGNC:39879 ENTREZGENE
Human Proteome Map KRT8P45 Human Proteome Map
NCBI Gene 149501 ENTREZGENE