MARK2P10 (MARK2 pseudogene 10) - Rat Genome Database

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Gene: MARK2P10 (MARK2 pseudogene 10) Homo sapiens
Analyze
Symbol: MARK2P10
Name: MARK2 pseudogene 10
RGD ID: 5130473
HGNC Page HGNC:39801
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: microtubule affinity regulating kinase 2 pseudogene 10
Related Functional Gene: MARK2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38796,858,164 - 96,859,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl796,858,182 - 96,859,618 (+)EnsemblGRCh38hg38GRCh38
GRCh37796,487,476 - 96,488,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36796,321,731 - 96,326,411 (+)NCBINCBI36Build 36hg18NCBI36
Celera791,181,425 - 91,182,932 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef791,089,397 - 91,090,904 (+)NCBIHuRef
CHM1_1796,417,518 - 96,419,025 (+)NCBICHM1_1
T2T-CHM13v2.0798,087,782 - 98,089,289 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2795,810,298 - 95,811,805 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12690205  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:225
Count of miRNA genes:212
Interacting mature miRNAs:223
Transcripts:ENST00000454959
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D7S1796  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,553,034 - 96,553,095UniSTSGRCh37
GRCh37796,552,728 - 96,553,017UniSTSGRCh37
Build 36796,390,664 - 96,390,953RGDNCBI36
Celera791,246,986 - 91,247,047UniSTS
Celera791,246,680 - 91,246,969RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,154,916 - 91,154,977UniSTS
HuRef791,154,614 - 91,154,899UniSTS
CRA_TCAGchr7v2795,875,564 - 95,875,625UniSTS
CRA_TCAGchr7v2795,875,258 - 95,875,547UniSTS
Marshfield Genetic Map7109.12UniSTS
Marshfield Genetic Map7109.12RGD
deCODE Assembly Map7106.69UniSTS
Whitehead-YAC Contig Map7 UniSTS
D7S624  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,526,677 - 96,526,953UniSTSGRCh37
Build 36796,364,613 - 96,364,889RGDNCBI36
Celera791,220,626 - 91,220,910RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,128,517 - 91,128,813UniSTS
CRA_TCAGchr7v2795,849,193 - 95,849,473UniSTS
Marshfield Genetic Map7108.59UniSTS
Marshfield Genetic Map7108.59RGD
D7S491  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,495,879 - 96,496,009UniSTSGRCh37
Build 36796,333,815 - 96,333,945RGDNCBI36
Celera791,189,828 - 91,189,954RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,097,799 - 91,097,925UniSTS
CRA_TCAGchr7v2795,818,701 - 95,818,827UniSTS
Marshfield Genetic Map7109.12UniSTS
Marshfield Genetic Map7109.12RGD
Genethon Genetic Map7109.5UniSTS
deCODE Assembly Map7106.69UniSTS
Whitehead-YAC Contig Map7 UniSTS
RH119216  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,490,755 - 96,491,032UniSTSGRCh37
Build 36796,328,691 - 96,328,968RGDNCBI36
Celera791,184,704 - 91,184,981RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,092,675 - 91,092,952UniSTS
CRA_TCAGchr7v2795,813,577 - 95,813,854UniSTS
TNG Radiation Hybrid Map742244.0UniSTS
AFM284ZC1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,554,132 - 96,554,320UniSTSGRCh37
Build 36796,392,068 - 96,392,256RGDNCBI36
Celera791,248,084 - 91,248,260RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,156,012 - 91,156,188UniSTS
CRA_TCAGchr7v2795,876,662 - 95,876,849UniSTS
Whitehead-YAC Contig Map7 UniSTS
RH47418  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,594,945 - 96,595,072UniSTSGRCh37
Build 36796,432,881 - 96,433,008RGDNCBI36
Celera791,288,855 - 91,288,982RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,196,687 - 91,196,814UniSTS
CRA_TCAGchr7v2795,917,443 - 95,917,570UniSTS
GeneMap99-GB4 RH Map7503.97UniSTS
A004Q32  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,596,258 - 96,596,414UniSTSGRCh37
Build 36796,434,194 - 96,434,350RGDNCBI36
Celera791,290,168 - 91,290,324RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,198,000 - 91,198,156UniSTS
CRA_TCAGchr7v2795,918,757 - 95,918,913UniSTS
GeneMap99-GB4 RH Map7504.07UniSTS
WI-21635  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37796,596,399 - 96,596,477UniSTSGRCh37
Build 36796,434,335 - 96,434,413RGDNCBI36
Celera791,290,309 - 91,290,387RGD
Cytogenetic Map7q21.3UniSTS
HuRef791,198,141 - 91,198,219UniSTS
CRA_TCAGchr7v2795,918,898 - 95,918,976UniSTS
GeneMap99-GB4 RH Map7507.85UniSTS
Whitehead-RH Map7465.8UniSTS
D7S1796  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q21.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 4 1
Below cutoff 27 51 28 10 67 9 83 32 354 11 239 28 1 12 62 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000454959
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl796,858,182 - 96,859,618 (+)Ensembl
RefSeq Acc Id: XR_041896
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36796,321,731 - 96,326,411 (+)NCBI Archive
Protein Sequences
GenBank Protein EAL24124 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC MARK2P10 COSMIC
Ensembl Genes ENSG00000227284 Ensembl, ENTREZGENE
GTEx ENSG00000227284 GTEx
HGNC ID HGNC:39801 ENTREZGENE
Human Proteome Map MARK2P10 Human Proteome Map
NCBI Gene 402679 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-31 MARK2P10  MARK2 pseudogene 10  MARK2P10  microtubule affinity regulating kinase 2 pseudogene 10  Symbol and/or name change 19259463 PROVISIONAL
2016-02-16 MARK2P10  microtubule affinity regulating kinase 2 pseudogene 10    MAP/microtubule affinity-regulating kinase 2 pseudogene 10  Symbol and/or name change 5135510 APPROVED