RIOK3P1 (RIO kinase 3 pseudogene 1) - Rat Genome Database

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Gene: RIOK3P1 (RIO kinase 3 pseudogene 1) Homo sapiens
Analyze
Symbol: RIOK3P1
Name: RIO kinase 3 pseudogene 1
RGD ID: 5129413
HGNC Page HGNC:39714
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RIOK3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381374,828,466 - 74,830,289 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1374,828,553 - 74,830,080 (+)EnsemblGRCh38hg38GRCh38
GRCh371375,402,603 - 75,404,426 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361374,300,530 - 74,302,525 (+)NCBINCBI36Build 36hg18NCBI36
Celera1356,300,990 - 56,302,785 (+)NCBICelera
Cytogenetic Map13q22.1NCBI
HuRef1356,100,765 - 56,102,560 (+)NCBIHuRef
CHM1_11375,370,403 - 75,372,198 (+)NCBICHM1_1
T2T-CHM13v2.01374,052,440 - 74,054,263 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:100
Interacting mature miRNAs:102
Transcripts:ENST00000418778
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G67149  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371375,403,859 - 75,403,997UniSTSGRCh37
Build 361374,301,860 - 74,301,998RGDNCBI36
Celera1356,302,219 - 56,302,357RGD
Cytogenetic Map13q22.2UniSTS
HuRef1356,101,994 - 56,102,132UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1
Below cutoff 19 17 12 2 11 1 40 17 37 2 23 15 2 12 30

Sequence


RefSeq Acc Id: ENST00000418778
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1374,828,553 - 74,830,080 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RIOK3P1 COSMIC
Ensembl Genes ENSG00000225944 Ensembl, ENTREZGENE
GTEx ENSG00000225944 GTEx
HGNC ID HGNC:39714 ENTREZGENE
Human Proteome Map RIOK3P1 Human Proteome Map
NCBI Gene 122145 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-12 RIOK3P1  RIO kinase 3 pseudogene 1    RIO kinase 3 (yeast) pseudogene 1  Symbol and/or name change 5135510 APPROVED