Gene: RIOK3P1 (RIO kinase 3 pseudogene 1) Homo sapiens |
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Analyze |
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Symbol: |
RIOK3P1 |
Name: |
RIO kinase 3 pseudogene 1 |
RGD ID: |
5129413 |
HGNC Page |
HGNC:39714 |
Description: |
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Type: |
pseudo (Ensembl: processed_pseudogene)
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RefSeq Status: |
INFERRED |
Related Functional Gene: |
RIOK3
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 74,828,466 - 74,830,289 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 74,828,553 - 74,830,080 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 75,402,603 - 75,404,426 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 74,300,530 - 74,302,525 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 13 | 56,300,990 - 56,302,785 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q22.1 | NCBI | | | | | HuRef | 13 | 56,100,765 - 56,102,560 (+) | NCBI | | HuRef | | | CHM1_1 | 13 | 75,370,403 - 75,372,198 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 74,052,440 - 74,054,263 (+) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: | 102 | Count of miRNA genes: | 100 | Interacting mature miRNAs: | 102 | Transcripts: | ENST00000418778 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Markers in Region
G67149 |
Human Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCh37 | 13 | 75,403,859 - 75,403,997 | UniSTS | GRCh37 | Build 36 | 13 | 74,301,860 - 74,301,998 | RGD | NCBI36 | Celera | 13 | 56,302,219 - 56,302,357 | RGD | | Cytogenetic Map | 13 | q22.2 | UniSTS | | HuRef | 13 | 56,101,994 - 56,102,132 | UniSTS | |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
High |
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Medium |
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Low |
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1
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1
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1
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Below cutoff |
19
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17
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12
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2
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11
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1
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40
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17
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37
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2
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23
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15
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2
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12
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30
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Sequence
RefSeq Acc Id: |
ENST00000418778 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 13 | 74,828,553 - 74,830,080 (+) | Ensembl |
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2012-12-12 |
RIOK3P1 |
RIO kinase 3 pseudogene 1 |
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RIO kinase 3 (yeast) pseudogene 1 |
Symbol and/or name change |
5135510 |
APPROVED |
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