ATP5PBP1 (ATP synthase peripheral stalk-membrane subunit b pseudogene 1) - Rat Genome Database

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Gene: ATP5PBP1 (ATP synthase peripheral stalk-membrane subunit b pseudogene 1) Homo sapiens
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Symbol: ATP5PBP1
Name: ATP synthase peripheral stalk-membrane subunit b pseudogene 1
RGD ID: 5129377
HGNC Page HGNC:39742
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 1; ATP5F1P1
Related Functional Gene: ATP5PB  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381351,598,440 - 51,599,460 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1351,598,416 - 51,599,460 (+)EnsemblGRCh38hg38GRCh38
GRCh371352,172,576 - 52,173,596 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1333,221,775 - 33,222,795 (+)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1332,962,266 - 32,963,286 (+)NCBIHuRef
T2T-CHM13v2.01350,813,372 - 50,814,392 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENST00000433775
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 3 10 1
Low 24 62 24 6 186 6 212 24 38 6 68 38 6 54 2
Below cutoff 628 851 626 185 688 128 1379 323 991 129 628 582 61 367 726 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000433775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1351,598,416 - 51,599,460 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ATP5PBP1 COSMIC
Ensembl Genes ENSG00000224451 Ensembl, ENTREZGENE
GTEx ENSG00000224451 GTEx
HGNC ID HGNC:39742 ENTREZGENE
Human Proteome Map ATP5PBP1 Human Proteome Map
NCBI Gene 100422523 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 ATP5PBP1  ATP synthase peripheral stalk-membrane subunit b pseudogene 1  ATP5F1P1  ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2016-02-18 ATP5F1P1  ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 1    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 1  Symbol and/or name change 5135510 APPROVED