ATP5MC1P7 (ATP synthase membrane subunit c locus 1 pseudogene 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ATP5MC1P7 (ATP synthase membrane subunit c locus 1 pseudogene 7) Homo sapiens
Analyze
Symbol: ATP5MC1P7
Name: ATP synthase membrane subunit c locus 1 pseudogene 7
RGD ID: 4892174
HGNC Page HGNC:39510
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 7; ATP5G1P7
Related Functional Gene: ATP5MC1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,432,866 - 69,433,413 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,432,972 - 69,433,371 (-)EnsemblGRCh38hg38GRCh38
GRCh371071,192,622 - 71,193,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,862,731 - 70,867,348 (-)NCBINCBI36Build 36hg18NCBI36
Celera1064,469,136 - 64,473,750 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,192,401 - 65,192,950 (-)NCBIHuRef
CHM1_11071,474,246 - 71,474,795 (-)NCBICHM1_1
T2T-CHM13v2.01070,300,918 - 70,301,465 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:234
Interacting mature miRNAs:244
Transcripts:ENST00000444398
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 12 2 3 1 28 1 11 6 4 25 8 3
Below cutoff 420 282 137 35 126 27 362 407 312 32 175 127 12 60 265

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000444398
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1069,432,972 - 69,433,371 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ATP5MC1P7 COSMIC
Ensembl Genes ENSG00000232734 Ensembl
GTEx ENSG00000232734 GTEx
HGNC ID HGNC:39510 ENTREZGENE
Human Proteome Map ATP5MC1P7 Human Proteome Map
NCBI Gene 100130962 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 ATP5MC1P7  ATP synthase membrane subunit c locus 1 pseudogene 7  ATP5G1P7  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 7  Symbol and/or name change 5135510 APPROVED
2016-02-18 ATP5G1P7  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 7    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 7  Symbol and/or name change 5135510 APPROVED