ATP5MC1P6 (ATP synthase membrane subunit c locus 1 pseudogene 6) - Rat Genome Database

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Gene: ATP5MC1P6 (ATP synthase membrane subunit c locus 1 pseudogene 6) Homo sapiens
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Symbol: ATP5MC1P6
Name: ATP synthase membrane subunit c locus 1 pseudogene 6
RGD ID: 4892171
HGNC Page HGNC:39509
Description: INTERACTS WITH sodium arsenite
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 6; ATP5G1P6
Related Functional Gene: ATP5MC1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381863,496,942 - 63,497,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1863,496,989 - 63,497,400 (+)EnsemblGRCh38hg38GRCh38
GRCh371861,164,175 - 61,164,736 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q21.33NCBI
HuRef1857,863,659 - 57,864,215 (+)NCBIHuRef
CHM1_11861,160,134 - 61,160,690 (+)NCBICHM1_1
T2T-CHM13v2.01863,702,014 - 63,702,575 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:217
Count of miRNA genes:211
Interacting mature miRNAs:216
Transcripts:ENST00000451206
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 3 1 1 135 7 1 23
Low 94 2 5 71 20 6 1213 7 2 26 205 73 75 7 667
Below cutoff 251 99 80 87 121 11 195 129 154 32 271 143 77 66 124

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000451206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1863,496,989 - 63,497,400 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ATP5MC1P6 COSMIC
Ensembl Genes ENSG00000214318 Ensembl
GTEx ENSG00000214318 GTEx
HGNC ID HGNC:39509 ENTREZGENE
Human Proteome Map ATP5MC1P6 Human Proteome Map
NCBI Gene 100505704 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 ATP5MC1P6  ATP synthase membrane subunit c locus 1 pseudogene 6  ATP5G1P6  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 6  Symbol and/or name change 5135510 APPROVED
2016-02-18 ATP5G1P6  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 6    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 6  Symbol and/or name change 5135510 APPROVED