ATP5MC1P5 (ATP synthase membrane subunit c locus 1 pseudogene 5) - Rat Genome Database

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Gene: ATP5MC1P5 (ATP synthase membrane subunit c locus 1 pseudogene 5) Homo sapiens
Analyze
Symbol: ATP5MC1P5
Name: ATP synthase membrane subunit c locus 1 pseudogene 5
RGD ID: 4892148
HGNC Page HGNC:39508
Description: INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine; 4,4'-sulfonyldiphenol; dexamethasone
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 5; ATP5G1P5
Related Functional Gene: ATP5MC1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813106,663,392 - 106,663,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13106,663,437 - 106,663,847 (+)EnsemblGRCh38hg38GRCh38
GRCh3713107,315,740 - 107,316,295 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613106,113,786 - 106,114,301 (+)NCBINCBI36Build 36hg18NCBI36
Celera1388,160,014 - 88,160,536 (+)NCBICelera
Cytogenetic Map13q33.3NCBI
HuRef1387,907,161 - 87,907,719 (+)NCBIHuRef
CHM1_113107,284,321 - 107,284,879 (+)NCBICHM1_1
T2T-CHM13v2.013105,883,728 - 105,884,283 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:351
Count of miRNA genes:202
Interacting mature miRNAs:205
Transcripts:ENST00000429024, ENST00000452440
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 5 1
Low 26 37 25 23 21 23 23 3 60 16 96 55 4 1 118 4
Below cutoff 344 524 226 75 107 48 630 495 738 83 386 336 29 217 442 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000429024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13106,663,437 - 106,663,847 (+)Ensembl
RefSeq Acc Id: XR_016535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 3613106,113,786 - 106,114,301 (+)NCBI Archive
Protein Sequences
GenBank Protein EAX09090 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC ATP5MC1P5 COSMIC
Ensembl Genes ENSG00000227590 Ensembl
GTEx ENSG00000227590 GTEx
HGNC ID HGNC:39508 ENTREZGENE
Human Proteome Map ATP5MC1P5 Human Proteome Map
NCBI Gene 390424 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 ATP5MC1P5  ATP synthase membrane subunit c locus 1 pseudogene 5  ATP5G1P5  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 5  Symbol and/or name change 5135510 APPROVED
2016-02-18 ATP5G1P5  ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 5    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 5  Symbol and/or name change 5135510 APPROVED