ZDHHC4P1 (zinc finger DHHC-type containing 4 pseudogene 1) - Rat Genome Database

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Gene: ZDHHC4P1 (zinc finger DHHC-type containing 4 pseudogene 1) Homo sapiens
Analyze
Symbol: ZDHHC4P1
Name: zinc finger DHHC-type containing 4 pseudogene 1
RGD ID: 4891558
HGNC Page HGNC:39443
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ZDHHC4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381342,933,680 - 42,934,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1342,933,858 - 42,934,892 (+)EnsemblGRCh38hg38GRCh38
GRCh371343,507,816 - 43,509,068 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1324,565,663 - 24,566,918 (+)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1324,311,707 - 24,312,964 (+)NCBIHuRef
CHM1_11343,475,372 - 43,476,624 (+)NCBICHM1_1
T2T-CHM13v2.01342,153,754 - 42,155,003 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:198
Interacting mature miRNAs:201
Transcripts:ENST00000396712
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 35 13 18 9 174 9 27 2 10 5 31 33 23 11
Below cutoff 871 673 589 195 616 119 1085 515 695 94 602 660 81 613 554 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000396712
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1342,933,858 - 42,934,892 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ZDHHC4P1 COSMIC
Ensembl Genes ENSG00000238025 Ensembl, ENTREZGENE
GTEx ENSG00000238025 GTEx
HGNC ID HGNC:39443 ENTREZGENE
Human Proteome Map ZDHHC4P1 Human Proteome Map
NCBI Gene 100420920 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-18 ZDHHC4P1  zinc finger DHHC-type containing 4 pseudogene 1    zinc finger, DHHC-type containing 4 pseudogene 1  Symbol and/or name change 5135510 APPROVED