CTAGE10P (CTAGE family member 10, pseudogene) - Rat Genome Database

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Gene: CTAGE10P (CTAGE family member 10, pseudogene) Homo sapiens
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Symbol: CTAGE10P
Name: CTAGE family member 10, pseudogene
RGD ID: 4144904
HGNC Page HGNC:37288
Description: INTERACTS WITH benzo[a]pyrene; cadmium dichloride
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: MIA2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,890,409 - 49,893,380 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,890,591 - 49,892,998 (+)EnsemblGRCh38hg38GRCh38
GRCh371350,464,545 - 50,467,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361349,362,650 - 49,363,335 (+)NCBINCBI36Build 36hg18NCBI36
Celera1331,519,272 - 31,522,243 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1331,258,459 - 31,261,430 (+)NCBIHuRef
CHM1_11350,432,332 - 50,435,303 (+)NCBICHM1_1
T2T-CHM13v2.01349,111,030 - 49,114,001 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTAGE10PHumanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of CTAGE10P promoterCTDPMID:27901495
CTAGE10PHumancadmium dichloride decreases expressionEXP 6480464Cadmium Chloride results in decreased expression of CTAGE10P mRNACTDPMID:38382870

PMID:10737800   PMID:12477932  



.

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:60
Interacting mature miRNAs:64
Transcripts:ENST00000318353
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597413416GWAS1509490_HBMI-adjusted waist-hip ratio QTL GWAS1509490 (human)1e-09body size trait (VT:0100005)134989168549891686Human
597374863GWAS1470937_Hwaist-hip ratio QTL GWAS1470937 (human)6e-09waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)134989168549891686Human
2292823PRSTS88_HProstate tumor susceptibility QTL 88 (human)Prostate tumor susceptibility134153205867532058Human
1643298BW212_HBody weight QTL 212 (human)2.670.0002Body weightBMI134153205867532058Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
332 721 903 641 1723 540 693 2 224 292 156 495 1954 1530 2 1491 209 772 455 68



Ensembl Acc Id: ENST00000318353
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1349,890,591 - 49,892,998 (+)Ensembl
RefSeq Acc Id: NR_003268
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381349,890,409 - 49,893,380 (+)NCBI
GRCh371350,464,545 - 50,467,516 (+)RGD
Build 361349,362,650 - 49,363,335 (+)NCBI Archive
Celera1331,519,272 - 31,522,243 (+)RGD
HuRef1331,258,459 - 31,261,430 (+)RGD
CHM1_11350,432,332 - 50,435,303 (+)NCBI
T2T-CHM13v2.01349,111,030 - 49,114,001 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
COSMIC CTAGE10P COSMIC
Ensembl Genes ENSG00000181358 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000318353 ENTREZGENE
GTEx ENSG00000181358 GTEx
HGNC ID HGNC:37288 ENTREZGENE
Human Proteome Map CTAGE10P Human Proteome Map
NCBI Gene 220429 ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 CTAGE10P  CTAGE family member 10, pseudogene    CTAGE family, member 10, pseudogene  Symbol and/or name change 5135510 APPROVED