MRPS18BP1 (mitochondrial ribosomal protein S18B pseudogene 1) - Rat Genome Database

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Gene: MRPS18BP1 (mitochondrial ribosomal protein S18B pseudogene 1) Homo sapiens
Analyze
Symbol: MRPS18BP1
Name: mitochondrial ribosomal protein S18B pseudogene 1
RGD ID: 4144455
HGNC Page HGNC:29741
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: MRPS18B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,201,058 - 216,201,826 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1216,201,635 - 216,201,826 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,374,400 - 216,375,168 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,441,600 - 214,441,791 (-)NCBINCBI36Build 36hg18NCBI36
Celera1189,598,755 - 189,598,946 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1187,049,851 - 187,050,619 (-)NCBIHuRef
CHM1_11217,647,090 - 217,647,858 (-)NCBICHM1_1
T2T-CHM13v2.01215,441,407 - 215,442,175 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12706105  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:245
Interacting mature miRNAs:259
Transcripts:ENST00000414228
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 1 27 4
Below cutoff 6 5 7 2 7 2 7 3 8 2 108 7 3 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000414228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1216,201,635 - 216,201,826 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MRPS18BP1 COSMIC
Ensembl Genes ENSG00000226013 Ensembl
GTEx ENSG00000226013 GTEx
HGNC ID HGNC:29741 ENTREZGENE
Human Proteome Map MRPS18BP1 Human Proteome Map
NCBI Gene 359762 ENTREZGENE