LOC120101972 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120101972 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120101972
Name: U6 spliceosomal RNA
RGD ID: 41364680
Description: Orthologous to human RNU6-758P (RNA, U6 small nuclear 758, pseudogene).
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,229,313 - 134,229,427 (+)NCBIGRCr8
mRatBN7.23113,775,940 - 113,776,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,775,940 - 113,776,054 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl3113,775,940 - 113,776,054 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3118,986,583 - 118,986,697 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120101972
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,229,313 - 134,229,427 (+)NCBIGRCr8
mRatBN7.23113,775,940 - 113,776,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,775,940 - 113,776,054 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl3113,775,940 - 113,776,054 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3118,986,583 - 118,986,697 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q36NCBI
RNU6-758P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,286,712 - 75,286,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,286,712 - 75,286,800 (-)EnsemblGRCh38hg38GRCh38
GRCh371675,320,610 - 75,320,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q23.1NCBI
CHM1_11676,733,056 - 76,733,144 (-)NCBICHM1_1
T2T-CHM13v2.01681,333,432 - 81,333,522 (-)NCBIT2T-CHM13v2.0
LOC119874072
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1139,030,510 - 39,030,613 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01141,310,368 - 41,310,471 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1141,310,368 - 41,310,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11140,001,057 - 40,001,160 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01139,784,677 - 39,784,780 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01140,425,023 - 40,425,126 (+)NCBIUU_Cfam_GSD_1.0

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Variants in LOC120101972
1 total Variants

1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat

1 to 10 of 41 rows





GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3113,775,940 - 113,776,054 (+)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48025 BioCyc
Ensembl Genes ENSRNOG00000055244 Ensembl
NCBI Gene LOC120101972 ENTREZGENE
PhenoGen LOC120101972 PhenoGen
RatGTEx ENSRNOG00000055244 RatGTEx
RNAcentral URS000068061E RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120101972  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15009315 737654 PROVISIONAL
2021-01-27 LOC120101972  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL