LOC120099078 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120099078 (small nucleolar RNA SNORA17) Rattus norvegicus
Analyze
Symbol: LOC120099078
Name: small nucleolar RNA SNORA17
RGD ID: 41212620
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm25613; predicted gene, 25613
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,086,700 - 45,086,830 (+)NCBIGRCr8
mRatBN7.22043,532,178 - 43,532,308 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,532,178 - 43,532,308 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2045,224,632 - 45,224,762 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120099078
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2043,532,178 - 43,532,308 (+)Ensembl
RefSeq Acc Id: XR_005497900
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,086,700 - 45,086,830 (+)NCBI
mRatBN7.22043,532,178 - 43,532,308 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3448 BioCyc
Ensembl Genes ENSRNOG00000056626 Ensembl
NCBI Gene LOC120099078 ENTREZGENE
PhenoGen LOC120099078 PhenoGen
RatGTEx ENSRNOG00000056626 RatGTEx
RNAcentral URS000066116D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099078  small nucleolar RNA SNORA17  Gm25613  predicted gene, 25613  Data merged from RGD:15010396 737654 PROVISIONAL
2021-01-27 LOC120099078  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm25613  predicted gene, 25613      Symbol and Name status set to provisional 45752 PROVISIONAL