ACTR3BP5 (ACTR3B pseudogene 5) - Rat Genome Database

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Gene: ACTR3BP5 (ACTR3B pseudogene 5) Homo sapiens
Analyze
Symbol: ACTR3BP5
Name: ACTR3B pseudogene 5
RGD ID: 4109585
HGNC Page HGNC:38682
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FKSG74
Related Functional Gene: ACTR3B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381038,696,596 - 38,698,241 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1038,696,424 - 38,697,902 (+)EnsemblGRCh38hg38GRCh38
GRCh371038,989,727 - 38,991,372 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361039,029,634 - 39,031,478 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map10p11.1NCBI
HuRef1038,680,639 - 38,682,284 (+)NCBIHuRef
CHM1_11039,027,216 - 39,028,860 (+)NCBICHM1_1
T2T-CHM13v2.01038,757,073 - 38,758,718 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:193
Interacting mature miRNAs:198
Transcripts:ENST00000448440, ENST00000541147
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
PMC310890P1  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p11.1UniSTS
Cytogenetic Map2p11.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 1
Below cutoff 30 39 18 2 36 53 27 57 1 40 29 2 7 43

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000448440
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1038,696,424 - 38,697,902 (+)Ensembl
RefSeq Acc Id: NR_045000
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381038,696,596 - 38,698,241 (+)NCBI
GRCh371038,989,727 - 38,991,372 (+)NCBI
HuRef1038,680,639 - 38,682,284 (+)NCBI
CHM1_11039,027,216 - 39,028,860 (+)NCBI
T2T-CHM13v2.01038,757,073 - 38,758,718 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAK31778 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC ACTR3BP5 COSMIC
Ensembl Genes ENSG00000227264 Ensembl
GTEx ENSG00000227264 GTEx
HGNC ID HGNC:38682 ENTREZGENE
Human Proteome Map ACTR3BP5 Human Proteome Map
NCBI Gene 399746 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-17 ACTR3BP5  ACTR3B pseudogene 5    ARP3 actin-related protein 3 homolog B (yeast) pseudogene 5  Symbol and/or name change 5135510 APPROVED