LOC120098718 (5S ribosomal RNA) - Rat Genome Database

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Gene: LOC120098718 (5S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120098718 (Ensembl: Rna5s7)
Name: 5S ribosomal RNA (Ensembl:RNA, 5S ribosomal 7)
RGD ID: 41093667
Description: Orthologous to human RNA5S15 (RNA, 5S ribosomal 15).
Type: rrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,500,548 - 68,500,666 (-)NCBIGRCr8
mRatBN7.21951,603,037 - 51,603,155 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,603,037 - 51,603,155 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,606,555 - 51,606,673 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,595,991 - 51,596,109 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,588,947 - 51,589,065 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,597,753 - 51,597,871 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,590,707 - 51,590,825 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,587,193 - 51,587,311 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




LOC120098718
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,500,548 - 68,500,666 (-)NCBIGRCr8
mRatBN7.21951,603,037 - 51,603,155 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,603,037 - 51,603,155 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,606,555 - 51,606,673 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,595,991 - 51,596,109 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,588,947 - 51,589,065 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,597,753 - 51,597,871 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,590,707 - 51,590,825 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1951,587,193 - 51,587,311 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map19q12NCBI
RNA5S15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,641,566 - 228,641,686 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,641,568 - 228,641,686 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,777,313 - 228,777,433 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361228,777,313 - 228,777,433 (-)NCBINCBI36Build 36hg18NCBI36
Celera1202,049,252 - 202,049,372 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,268,521 - 199,268,641 (-)NCBIHuRef
T2T-CHM13v2.01227,746,778 - 227,746,898 (-)NCBIT2T-CHM13v2.0
Gm25212
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,341,836 - 124,341,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,341,838 - 124,341,956 (-)EnsemblGRCm39 Ensembl
GRCm388123,615,097 - 123,615,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,615,099 - 123,615,217 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map8E1NCBI

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1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat

1 to 10 of 10 rows





RefSeq Transcripts XR_005497136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000104808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,603,037 - 51,603,155 (-)Ensembl
RefSeq Acc Id: XR_005497136
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,500,548 - 68,500,666 (-)NCBI
mRatBN7.21951,603,037 - 51,603,155 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 18 of 18 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-5286 BioCyc
Ensembl Genes ENSRNOG00000064514 Ensembl
  ENSRNOG00000065132 Ensembl
  ENSRNOG00000065950 Ensembl
  ENSRNOG00000066581 Ensembl
  ENSRNOG00000067783 Ensembl
  ENSRNOG00000069085 Ensembl
  ENSRNOG00000070337 Ensembl
NCBI Gene LOC120098718 ENTREZGENE
PhenoGen LOC120098718 PhenoGen
RatGTEx ENSRNOG00000064514 RatGTEx
  ENSRNOG00000065132 RatGTEx
  ENSRNOG00000065950 RatGTEx
  ENSRNOG00000066581 RatGTEx
  ENSRNOG00000067783 RatGTEx
  ENSRNOG00000069085 RatGTEx
  ENSRNOG00000070337 RatGTEx
RNAcentral URS000064027A RNACentral
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098718  5S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL